CN189588

Overview
NameCN189588
Unique NameCN189588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 3
Query:   45 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            M  K+AC VLL CMV+ AP A+A +TCGQVTS+L  C+              CC G+K L   A TT DRQ+ C CLK+AA S  +L+L  A+ LP  C VNIPY+ISPS DCS+V+
Sbjct:    3 MVNKIACFVLL-CMVVVAPHAEA-LTCGQVTSTLAPCLPYLMNRGPLGG---CCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-RNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            +KLAC +LL CM++  PI + AA++CG V S+L AC+              CCSG+K+LNS A TTPDRQ  CNC++ AA ++   LN   A+G+P+ CGVNIPY+IS S +C  VR
Sbjct:    5 MKLAC-LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA--CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.709e-23
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            +K  CA L+MCM++ AP+A+A +TCG V S L  C+              CC GIKSLNSAA +  DR++ C CLK+AA SI+ +N   A+ LPRQCGV++PY ISP+ +C+ +
Sbjct:    7 VKFTCA-LVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGPSAA--CCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.709e-23
Identity = 52/109 (47.71%), Postives = 70/109 (64.22%), Query Frame = 3
Query:   66 AVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            A++   ++ G     AA++CGQV S++  C+              CCSG++SLNSAATTT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:   10 ALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAA--CCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   54 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            KLA  V L CMV+  PIAQA +TCGQV+S+L  C+              CC+GI+++N+ A TT DRQ+ CNCLK  + S+  +N N A+ LP +CGVN+PY+ISPS +C+ V+
Sbjct:    8 KLALVVAL-CMVVSVPIAQA-LTCGQVSSNLAPCIAYVRGGGAVPPA--CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            L L   V    ++ G     AA++CGQV S++  C+              CCSG++SLNSAA+TT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAA--CCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            L L   V    ++ G     AA++CGQV S++  C+              CCSG++SLNSAA+TT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAA--CCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 3
Query:   54 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            +L    L+  +++ AP A  A+TCGQV S++  C+              CCSG++SL +AA+TT DR++ CNCLK AA  I+ LN   A+ +P +CGV++PY IS S+DCSRV
Sbjct:    5 QLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAA--CCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 3
Query:   54 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            +L    L+  +++ AP A  A+TCGQV S++  C+              CCSG++SL +AA+TT DR++ CNCLK AA  I+ LN   A+ +P +CGV++PY IS S+DCSRV
Sbjct:    5 QLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAA--CCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 3
Query:   54 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            K   AV+++ +++ AP A +AVTCGQV S L  C+              CC G+++LNSAA TT DRQ+ C CLK    ++  L  +L +G+P +CGVNIPY ISPS DCSRV
Sbjct:    8 KYVAAVMVVALLLAAPAA-SAVTCGQVVSMLAPCIMYATGRVSAPTGG-CCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
The following BLAST results are available for this feature:
BLAST of CN189588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP2_SOLCI1.308e-2351.28Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_ARATH1.308e-2348.72Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_BETVU1.709e-2347.37Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLT2B_ORYSJ1.709e-2347.71Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP_PRUAV2.915e-2348.25Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP2_ORYSI2.915e-2346.49Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ2.915e-2346.49Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP1_ORYSJ8.481e-2344.25Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI8.481e-2344.25Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP4_ORYSJ1.447e-2246.90Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189588 ID=CN189588; Name=CN189588; organism=Citrus sinensis; type=EST; length=572bp
CAGTTAGCACATTCTCATTTCTCAGAGCTATTAAGACATTATACATGGCT
CTTAAGCTTGCTTGTGCTGTGCTGCTAATGTGCATGGTGATGGGTGCGCC
CATTGCCCAAGCTGCCGTCACATGTGGCCAAGTGACAAGCTCTCTTCAAG
CGTGCATGCCATATGTGACGGGCCCCGGTGGAGGCGCTGTGCCGCCAGCC
TGCTGTAGCGGGATTAAGAGTCTTAACTCCGCAGCCACCACCACACCCGA
CCGCCAGAGCGTTTGCAACTGCTTGAAAACCGCTGCTGGCTCCATCAGAA
ACCTCAACCTCAACCTCGCTTCTGGCCTCCCACGCCAGTGTGGCGTCAAC
ATTCCTTACCAAATCAGCCCATCCGTTGACTGCAGCAGAGTGAGATGAAG
ATCTTGGAAAAGAGAATATATGCTGAAGTATTATTATATATAATATGAAT
ATAAAATGGAATAATAAAGTGGGTGATATGGACTCTCCTAGGTCAAGAGA
GTATTAGTACTATGCATCTATCATATATGTACCAGAGTGTCATCCACCGA
GTCCCTTGCCACGATTCTCCCT
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