CN189588

Overview
NameCN189588
Unique NameCN189588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 3
Query:   48 ALKLACAVLLMCMVM-GAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            +L+++C V LMCMV+  AP+A+AA++CG V+ +L  C+              CC G+K LN AA TT DR++ CNCLK++AGSI  L     + LP +CGV +PY IS S +C+ +R
Sbjct:    3 SLRVSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLKGGPGPSPQ--CCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            +KL+C VL  CM++  PIA  AA++CG V+ +L AC+              CC+G+ +LN+ A TTPDRQ  C CL  AA S   LN   A+GLP+ CGVNIPY+IS S +C+ VR
Sbjct:    5 VKLSCLVLA-CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG--CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   45 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            M  K+AC V+L CMV+ AP A+A ++CGQV S L  C+              CC G+K L  AA +  DR++ C CLK+AA +I+ +++  A+GLP  CGVNIPY+ISPS DCS+V+
Sbjct:    3 MVGKIACFVVL-CMVVVAPHAEA-LSCGQVQSGLAPCLPYLQGRGPLGS---CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = 3
Query:   39 LYMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            L +A+ +  AV++   V+ A  ++AA++CGQV+S++  C+              CCSG++SLNSAA TT DR++ CNCLK AA  I  LN   A+ +P +CGV++PY IS S DCSRV
Sbjct:    4 LAVAIAVVAAVVV---VLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAG-CCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.223e-22
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            +KL+C VL  CM++  PIA  AA++CG V+ +L AC+              CCSG+ SLN+ A TTPDRQ  C CL  AA ++  +N+  A+GLP+ CGVNIPY+IS + +C+ V+
Sbjct:    5 VKLSCLVLA-CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA--CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.497e-22
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            +KL+C VL  CM++  PIA  AA++CG V+ +L AC+              CC+G+ +LN+ A TTPDRQ  C CL  AA +   LN   A+GLP+ CGVNIPY+IS S +C+ VR
Sbjct:    5 VKLSCLVLA-CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG--CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 3
Query:   72 LLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            L++ + M   +A A +TCGQVTSSL  C+              CC+GI+++N  A TT DRQ+ CNCLK  AGSI  +N N A+GLP +CGVN+PY+IS S +C+ V+
Sbjct:   11 LVVALCMAVSVAHA-ITCGQVTSSLAPCIGYVRSGGAVPPA--CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 3
Query:   57 LACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            L  A  L+ M+  AP A  A+ CGQV S ++ C+              CC+G++ L++ A ++ DRQ+VCNCLK  A  I NLNLN A+ +P +C VN+PY ISP +DCSR+
Sbjct:    7 LLMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQGGPGPSGE--CCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   54 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 395
            K+AC V+  CMV+ AP A++ ++CG+VTS L  C+              CC G+K L  AA T  DR++ C CLK+AA SI+ ++   A+GLP  CGVNIPY+ISPS DCS V+
Sbjct:    6 KIACFVVF-CMVVVAPHAES-LSCGEVTSGLAPCLPYLEGRGPLGG---CCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CN189588 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.225e-21
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 3
Query:   51 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 392
            L +    ++  +++ A  ++AA++CGQV S++  C+              CCSG++SLN+AA TT DR++ CNCLK AA  +  LN   A+ +P +CGV+IPY IS S DCSRV
Sbjct:    7 LAVVATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAG-CCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
The following BLAST results are available for this feature:
BLAST of CN189588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP1_LENCU1.447e-2244.44Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTPB_BRAOT2.467e-2247.41Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP2_TOBAC2.467e-2247.01Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SORBI2.467e-2244.92Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP3_BRANA3.223e-2245.69Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_BRANA5.497e-2246.55Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_MALDO7.179e-2247.22Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_HORVU7.179e-2243.75Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_SOLLC9.376e-2247.37Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP_MAIZE1.225e-2142.11Non-specific lipid-transfer protein OS=Zea mays PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189588 ID=CN189588; Name=CN189588; organism=Citrus sinensis; type=EST; length=572bp
CAGTTAGCACATTCTCATTTCTCAGAGCTATTAAGACATTATACATGGCT
CTTAAGCTTGCTTGTGCTGTGCTGCTAATGTGCATGGTGATGGGTGCGCC
CATTGCCCAAGCTGCCGTCACATGTGGCCAAGTGACAAGCTCTCTTCAAG
CGTGCATGCCATATGTGACGGGCCCCGGTGGAGGCGCTGTGCCGCCAGCC
TGCTGTAGCGGGATTAAGAGTCTTAACTCCGCAGCCACCACCACACCCGA
CCGCCAGAGCGTTTGCAACTGCTTGAAAACCGCTGCTGGCTCCATCAGAA
ACCTCAACCTCAACCTCGCTTCTGGCCTCCCACGCCAGTGTGGCGTCAAC
ATTCCTTACCAAATCAGCCCATCCGTTGACTGCAGCAGAGTGAGATGAAG
ATCTTGGAAAAGAGAATATATGCTGAAGTATTATTATATATAATATGAAT
ATAAAATGGAATAATAAAGTGGGTGATATGGACTCTCCTAGGTCAAGAGA
GTATTAGTACTATGCATCTATCATATATGTACCAGAGTGTCATCCACCGA
GTCCCTTGCCACGATTCTCCCT
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