DR908772

Overview
NameDR908772
Unique NameDR908772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 67/186 (36.02%), Postives = 98/186 (52.69%), Query Frame = 1
Query:   22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            T  +   G   +VTGA++GIG ETA+ LA RG  V +A R++  G+ V + I     + +V   +LD+S   S+R FA  + ++ + L++LINNAG+M  P+  + D  E+    N            + +K++A       RIVNVSS AH       I F  +  E  YN+  AY  SKLANIL
Sbjct:   34 TSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNVSSLAHHLG---RIHFHNLQGEKFYNAGLAYCHSKLANIL 211          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 68/192 (35.42%), Postives = 97/192 (50.52%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA-------------KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            G T ++TGA+SG+G  TA  L   G  VIM  R+ A  ++    + +E+  A             ++   ELD++SL SVR F  E   +   L++LINNAGI   P+M ++D  E+QF  N              +     KSS   RIV VSS+ +++     I FD +N E +YN    Y +SKLANIL
Sbjct:   43 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLL-----KSSAPSRIVVVSSKLYKYG---DINFDDLNSEQSYNKSFCYSRSKLANIL 226          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.652e-21
Identity = 63/179 (35.20%), Postives = 93/179 (51.96%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            G   ++TGA++GIG ETAR LA RG  V +A R++  G+     I  +  +++V   +LD+S   S+R FA  + ++ + L+ILINNAG+M  P+  + D  E     N            + +K +A       R+VNVSS AH       I F  +  E  Y+   AY  SKLAN+L
Sbjct:   39 GKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSA-----PARVVNVSSVAHHIG---KIPFHDLQSEKRYSRGFAYCHSKLANVL 209          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 64/186 (34.41%), Postives = 98/186 (52.69%), Query Frame = 1
Query:   22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            T  +   G  AIVTGA++GIG ETA+ LA RG  V +A R++  G+     I     +++V   +LD++   S+R FA ++ ++ + L++LINNAG+M  P+  + D  E+    N            + +K++A       RIVN+SS  H       I F  +  E  Y++  AY  SKLANIL
Sbjct:   31 TSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNLSSLGHHLG---RIHFHNLQGEKFYSAGLAYCHSKLANIL 208          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: DHRSX_MOUSE (Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLA 570
            G  AIVTGA++GIG  TAR LA  G+ V++A  +   G++V  +I  E+ S +   + LD++SLASVR FA ++ + G PL++L+NNAG+M  P   ++D  E     N              ++ +  +  R  R+V V S  H   Y   +    ++   AY+ + AY QSKLA
Sbjct:   43 GRVAIVTGATAGIGRSTARQLARLGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLDLASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAETEDGFERHLGVNFLGHFLLTLLLLPALRASGAE-GRGSRVVTVGSATH---YVGTVDMADLHGRHAYSPYAAYAQSKLA 214          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.201e-21
Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN-DESAYNSFGAYGQSKLANIL 579
            G T IVTGA++GIG +TA  LA RG +VI+A R+M     A KD+R     E  + +V A  LD++SL S+R+FA +   +   ++IL+NNA +M  P   ++D  E+QF  N            D +     K+S   RI+N+SS AH   +   I F+ +N     Y++  AY QSKLA +L
Sbjct:   38 GKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIR----GETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKL-----KASAPSRIINLSSLAHVAGH---IDFEDLNWQMKKYDTKAAYCQSKLAVVL 209          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20
Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA----------KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            G T ++TGA+SG+G  TA  L   G  VIM  R+ A  ++    + +E+  A          ++   ELD++SL SVR F  E   +   L++LINNAG+   P+  ++D  E+QF  N              +     KSS   RIV VSS+ +++     I F+ +N E +YN    Y +SKLANIL
Sbjct:   44 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLGHFLLTNLLLGLL-----KSSAPSRIVVVSSKLYKYG---EINFEDLNSEQSYNKSFCYSRSKLANIL 224          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: WWOX_DROME (WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 68/197 (34.52%), Postives = 98/197 (49.75%), Query Frame = 1
Query:    4 STAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA--MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAY--SEGIRFDKIN-DESAYNSFGAYGQSKLANIL 579
            STA +V  G D  G TA++TGA+ GIG ETAR LA  G  +I A RN ++ +   E I +E P+A+       LD+SSL SV++F  E       ++ LI NAG+ A P+  + D +E  F  +                        + RI+ +SSE+HRFA    E +    ++     Y S  AY  +KL N+L
Sbjct:  108 STALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQLETLF-------DYKTRIIVLSSESHRFANLPVENLAVHHLSPPPEKYWSMMAYNNAKLCNVL 297          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: OXIR_STRAT (Probable oxidoreductase OS=Streptomyces antibioticus PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 69/187 (36.90%), Postives = 95/187 (50.80%), Query Frame = 1
Query:   31 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF-MLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA---YNSFGAYGQSKLANIL 579
            +D TG  A+VTG +SG+G ET R LA  G  V +A R   + + + + +     + +V A  LD+S  ASV  FA  +     PL+IL+ NAGIMA P   L+ +  E+Q ATN             T    A + +   RIV VSS AH  A      FD  +   A   Y+ + AYGQSK A++L
Sbjct:    1 MDLTGRRAVVTGGASGLGAETVRALAAAGAEVTVATRRPLSAEPLVQELAAAGGAGRVTAEALDLSDPASVESFARAWRG---PLDILVANAGIMALPTRTLAPNGWEMQLATNYLGHFALA-----TGLHAALRDAGSARIVVVSSGAHLDA-----PFDFEDAHFARRPYDPWVAYGQSKAADVL 174          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: OXIR_STRLI (Probable oxidoreductase OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 72/190 (37.89%), Postives = 97/190 (51.05%), Query Frame = 1
Query:   31 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF-MLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESA---YNSFGAYGQSKLANIL 579
            +D TG  A+VTG +SG+G ET R LA  G  V +A R+  +     E +V+E  +A   +V A  LD+S +ASV  FA  +     PL+IL+ NAGIMA P   L+    E+Q ATN             T    A + +   RIV VSS AH      G  FD  +   A   Y+ + AYG SK A++L
Sbjct:    1 MDLTGRRAVVTGGASGLGAETVRALAAAGAEVTIATRHPQSA----EPLVQEAAAAGAGRVHAEALDLSDVASVDSFARAWRG---PLDILVANAGIMALPTRTLTPYGWEMQLATNYLGHFALA-----TGLHAALRDAGSARIVVVSSGAHL-----GTPFDFEDPHFARRPYDPWAAYGNSKTADVL 173          
The following BLAST results are available for this feature:
BLAST of DR908772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RDH11_HUMAN1.495e-2236.02Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
RDH14_HUMAN7.418e-2235.42Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]
RDH12_HUMAN1.652e-2135.20Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
RDH11_MOUSE2.158e-2134.41Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
DHRSX_MOUSE3.681e-2135.23Dehydrogenase/reductase SDR family member on chrom... [more]
RDH13_MOUSE8.201e-2138.04Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH14_MOUSE1.827e-2034.39Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 ... [more]
WWOX_DROME1.710e-1834.52WW domain-containing oxidoreductase OS=Drosophila ... [more]
OXIR_STRAT2.090e-1636.90Probable oxidoreductase OS=Streptomyces antibiotic... [more]
OXIR_STRLI3.566e-1637.89Probable oxidoreductase OS=Streptomyces lividans P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16900 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908772 ID=DR908772; Name=DR908772; organism=Citrus sinensis; type=EST; length=582bp
TCCTCAACAGCTGAGGAAGTTACTCAAGGAATTGATGGCACTGGCCTCAC
AGCCATTGTCACAGGAGCATCAAGTGGTATTGGCACTGAAACTGCACGTG
TCCTTGCCTTGCGTGGTGTCCATGTGATTATGGCGGTCAGGAATATGGCT
GCTGGTAAAGATGTTAGAGAGGCAATAGTCAAGGAAATCCCCTCTGCTAA
AGTTGATGCCATGGAGTTGGATGTCAGTTCCTTGGCATCTGTGAGAAAAT
TTGCTTCAGAATATAATAGCCAGGGTCGTCCACTGAATATCCTAATAAAC
AATGCAGGAATAATGGCAAGCCCATTCATGCTATCGAAAGACAACATAGA
ACTACAGTTTGCAACAAATCACTTGGGTCATTTTCTGCTGACTCATCTTT
TATTGGACACCATGAAGAAGACAGCGCAAAAGAGTAGCAGGGAAGGAAGA
ATTGTGAATGTCTCCTCAGAGGCTCATCGTTTTGCTTATAGTGAAGGAAT
TCGTTTTGACAAAATCAATGATGAGTCAGCGTACAACAGTTTTGGTGCGT
ATGGCCAATCGAAGCTTGCCAACATTTTGCAT
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