DR908772

Overview
NameDR908772
Unique NameDR908772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: DHR13_BOVIN (Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 66/179 (36.87%), Postives = 90/179 (50.28%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            G TA+VTGA+SGIG  TA  LA RG  V++A R+   G+     + +E  + +V  M LD++SLASVR FA+ + S    L+ILI+NAGI  S    +++   L    N              +     K+S   R+V VSS AHR    +  R D            AY  SKLAN+L
Sbjct:   36 GRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGI--SSCGRTREPFNLLLRVNHIGPFLLTHLLLPRL-----KTSAPSRVVVVSSAAHRRGRLDFTRLDH-PVVGWQQELRAYANSKLANVL 206          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: DHR13_MOUSE (Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 62/179 (34.64%), Postives = 88/179 (49.16%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            G T +VTGA+SGIG  TA  LA RG  V++A R+   G+     + +E  + +V  M LD++SLASV+ FA+ + S    L++LI+NAGI  S    +++   L    N              ++  A       R+V VSS AHR    +  R D            AY  SKLAN+L
Sbjct:   36 GRTVVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGI--SSCGRTRETFNLLLRVNHVGPFLLTHLLLPRLRSCA-----PSRVVIVSSAAHRRGRLDFTRLD-CPVVGWQQELRAYADSKLANVL 206          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: DHR13_HUMAN (Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14
Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            G TA+VTGA+SGIG  TA  LA RG  V++A R+   G+     + +E  + +V  M LD++SLASVR FA+ + S    L+ILI+NAGI  S    +++   L    N              +K  A       R+V V+S AH     +  R D+           AY  +KLAN+L
Sbjct:   36 GRTAVVTGANSGIGKMTALELARRGARVVLACRSQERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGI--SSCGRTREAFNLLLRVNHIGPFLLTHLLLPCLKACA-----PSRVVVVASAAHCRGRLDFKRLDR-PVVGWRQELRAYADTKLANVL 206          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 45/135 (33.33%), Postives = 65/135 (48.15%), Query Frame = 1
Query:   49 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSR 441
            TAI+TGASSG+G   A+ LA  G  HV+MA R+    +   + +   +P+     + LD+SSL SVR+F   + + GR L+ L+ NA +    A     + D  EL   TN            D +K    K  R
Sbjct:   87 TAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKKV--GMPAGSYSILHLDLSSLESVRQFVQNFKASGRRLDALVCNAAVYLPTAKEPRFTADGFELSVGTNHLGHFLLTNLLLDDLKNAPNKQPR 219          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   49 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATN 369
            T I+TGASSG+G   A+ L  +G HVIMA RN+   + V + +    P      ++LD+  L SVR+F +++   GRPL  L+ NA +   +    + S D+ EL  ATN
Sbjct:    8 TVIITGASSGVGLYGAKALIDKGWHVIMACRNLDKTQKVADEL--GFPKDSYTIIKLDLGYLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATN 115          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   49 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATN 369
            T ++TGASSG+G   A+ L  RG HV+MA RN+       +++     S  +  M +D+ SL SVRKF +++   G+ L+ L+ NA +   +    M S +  EL  ATN
Sbjct:    8 TVVITGASSGVGLYAAKALVKRGWHVVMACRNLEKADSAAKSLGMSPDSYTL--MHIDLGSLDSVRKFVTQFRESGKSLDALVCNAAVHMPLLKEPMRSPEGYELSVATN 115          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 57/198 (28.79%), Postives = 87/198 (43.94%), Query Frame = 1
Query:   49 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYS-----------------EGIRFDKINDESAYNSFGAYGQSKLANIL 579
            + I+TGASSG+G  TA+ LA  G  HVIMA R+    K  R A    +P      M LD++SL SVR+F   +    RPL++L+ NA +    A     + D  EL   TN            D + K+   S R   + +++   +  A +                  G+    + D + ++   AY  SK+ N+L
Sbjct:   87 SVIITGASSGLGLATAKALAETGKWHVIMACRDFL--KAERAAKSAGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPTAKEPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGMNSSAMIDGAEFDGAKAYKDSKVCNML 282          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 58/218 (26.61%), Postives = 97/218 (44.50%), Query Frame = 1
Query:    1 SSTAEEVTQGIDGTGL----TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYS-----------------EGIRFDKINDESAYNSFGAYGQSKLANIL 579
            ++++  VT+ +DG         +VTGASSG+G  TA+ LA  G  +VIMA R+    +   +++   +P      M LD++SL SVR+F   +     PL++L+ NA +    A     S +  EL  ATN            D +KK+   S R   + +++   +  A +                  G+    + D   ++   AY  SK+ N+L
Sbjct:   70 ATSSPTVTKSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSV--GMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNML 285          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 56/198 (28.28%), Postives = 88/198 (44.44%), Query Frame = 1
Query:   49 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYS-----------------EGIRFDKINDESAYNSFGAYGQSKLANIL 579
            + ++TGASSG+G  TA+ LA  G  HVIMA R+    K  R A    I       M LD++SL SVR+F   +   GRPL++L+ NA +    A     + +  EL   TN            + + K++  S R   + +++   +  A +                  G++   I D   ++   AY  SK+ N+L
Sbjct:   88 SVVITGASSGLGLATAKALAETGKWHVIMACRDFL--KAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLKSSMI-DGGEFDGAKAYKDSKVCNML 282          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 52/185 (28.11%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKIN------DESAYNSFGAYGQSKLANIL 579
            G   +VTG +SGIG  TA  +A RG  V +  R+ +  +  +  I++E  +  +    +D+S   SV KF   +  Q   LN+LINNAG M +   L++D +E  FATN              ++K       + R++ VS        S G+   K+N      + +A++    Y Q+K   ++
Sbjct:   40 GRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENF-KQEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIPVLEK-----EHDPRVITVS--------SGGMLVQKLNTDDPQSERTAFDGTMVYAQNKRQQVV 210          
The following BLAST results are available for this feature:
BLAST of DR908772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
DHR13_BOVIN1.770e-1536.87Dehydrogenase/reductase SDR family member 13 OS=Bo... [more]
DHR13_MOUSE3.337e-1434.64Dehydrogenase/reductase SDR family member 13 OS=Mu... [more]
DHR13_HUMAN9.710e-1435.20Dehydrogenase/reductase SDR family member 13 OS=Ho... [more]
POR_CHLRE5.328e-1233.33Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_SYNY39.088e-1238.18Light-dependent protochlorophyllide reductase OS=S... [more]
POR_PLEBO1.187e-1136.36Light-dependent protochlorophyllide reductase OS=P... [more]
POR_DAUCA1.550e-1128.79Protochlorophyllide reductase, chloroplastic OS=Da... [more]
PORB_ARATH1.550e-1126.61Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_CUCSA3.454e-1128.28Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
DHR12_BOVIN4.511e-1128.11Dehydrogenase/reductase SDR family member 12 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16900 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908772 ID=DR908772; Name=DR908772; organism=Citrus sinensis; type=EST; length=582bp
TCCTCAACAGCTGAGGAAGTTACTCAAGGAATTGATGGCACTGGCCTCAC
AGCCATTGTCACAGGAGCATCAAGTGGTATTGGCACTGAAACTGCACGTG
TCCTTGCCTTGCGTGGTGTCCATGTGATTATGGCGGTCAGGAATATGGCT
GCTGGTAAAGATGTTAGAGAGGCAATAGTCAAGGAAATCCCCTCTGCTAA
AGTTGATGCCATGGAGTTGGATGTCAGTTCCTTGGCATCTGTGAGAAAAT
TTGCTTCAGAATATAATAGCCAGGGTCGTCCACTGAATATCCTAATAAAC
AATGCAGGAATAATGGCAAGCCCATTCATGCTATCGAAAGACAACATAGA
ACTACAGTTTGCAACAAATCACTTGGGTCATTTTCTGCTGACTCATCTTT
TATTGGACACCATGAAGAAGACAGCGCAAAAGAGTAGCAGGGAAGGAAGA
ATTGTGAATGTCTCCTCAGAGGCTCATCGTTTTGCTTATAGTGAAGGAAT
TCGTTTTGACAAAATCAATGATGAGTCAGCGTACAACAGTTTTGGTGCGT
ATGGCCAATCGAAGCTTGCCAACATTTTGCAT
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