DR908772

Overview
NameDR908772
Unique NameDR908772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 55/196 (28.06%), Postives = 85/196 (43.37%), Query Frame = 1
Query:   55 IVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYS-----------------EGIRFDKINDESAYNSFGAYGQSKLANIL 579
            ++TGASSG+G  TA+ LA  G  HVIMA R+    K  R A    +       M LD++SL SVR+F   +     PL++LINNA +    A     + D  E+   TN            + +KK+   S R   + +++   +  A +                  G+    + D   ++   AY  SK+ N+L
Sbjct:   90 VITGASSGLGLATAKALAESGKWHVIMACRDYL--KAARAAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTADGFEISVGTNHLGHFLLSRLLLEDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNML 283          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: PORC_ARATH (Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   49 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVD--AMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSR 441
            TA++TGASSG+G  TA+ LA  G  HVIMA RN        E   + +  +K D   M LD++SL SV++F   +    +PL++L+ NA +    A     + +  E+   TN            D +KK+   S R
Sbjct:   91 TAVITGASSGLGLATAKALADTGKWHVIMACRNFLKA----EKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQPTAKEPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKR 223          
The following BLAST results are available for this feature:
BLAST of DR908772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
POR_PEA5.891e-1128.06Protochlorophyllide reductase, chloroplastic OS=Pi... [more]
PORC_ARATH7.694e-1133.58Protochlorophyllide reductase C, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16900 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908772 ID=DR908772; Name=DR908772; organism=Citrus sinensis; type=EST; length=582bp
TCCTCAACAGCTGAGGAAGTTACTCAAGGAATTGATGGCACTGGCCTCAC
AGCCATTGTCACAGGAGCATCAAGTGGTATTGGCACTGAAACTGCACGTG
TCCTTGCCTTGCGTGGTGTCCATGTGATTATGGCGGTCAGGAATATGGCT
GCTGGTAAAGATGTTAGAGAGGCAATAGTCAAGGAAATCCCCTCTGCTAA
AGTTGATGCCATGGAGTTGGATGTCAGTTCCTTGGCATCTGTGAGAAAAT
TTGCTTCAGAATATAATAGCCAGGGTCGTCCACTGAATATCCTAATAAAC
AATGCAGGAATAATGGCAAGCCCATTCATGCTATCGAAAGACAACATAGA
ACTACAGTTTGCAACAAATCACTTGGGTCATTTTCTGCTGACTCATCTTT
TATTGGACACCATGAAGAAGACAGCGCAAAAGAGTAGCAGGGAAGGAAGA
ATTGTGAATGTCTCCTCAGAGGCTCATCGTTTTGCTTATAGTGAAGGAAT
TCGTTTTGACAAAATCAATGATGAGTCAGCGTACAACAGTTTTGGTGCGT
ATGGCCAATCGAAGCTTGCCAACATTTTGCAT
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