DR908770

Overview
NameDR908770
Unique NameDR908770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SILPO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter pomeroyi GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIA-IGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTGD++A + AC+A D+ +  +I A+E+ GG  +VTADHGN E M+     G            T+HTL PVP+A +GGP           L +G L+++A T + L G   P +
Sbjct:  398 VGHTGDLKAAIKACEAVDQGLSRVIAALEQAGGAMIVTADHGNCEMMIDPETGGPH----------TAHTLNPVPVALVGGPA-------GVTLRDGRLSDLAPTVLALMGLPKPPE 497          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG + A + AC+A D+ + ++++A+EK GG  +V ADHGN E  +     G            T+HT  PVP+ + G   P+  K R    NG LA+VA T ++L G + P +
Sbjct:  398 VGHTGSLPAAIRACEAVDKGLGMMLEALEKAGGAAVVIADHGNCETTIDPETGGPH----------TAHTTNPVPVIVFGG--PEGAKLR----NGRLADVAPTVLDLMGLDLPPE 497          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGL-PDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGGPG   D ++ R+    G LA+VA T + L     P+D
Sbjct:  425 VGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGPGYGKDTIRLRS---GGRLADVAPTLLELLELTPPAD 529          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_AGRT5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTGD++A + AC+A D  +  ++ A+EKVGG  LV ADHGN E MV     G            T+HT  PVP+ + G   P+  K    + +G LA+VA T + L     P +
Sbjct:  397 VGHTGDLQAAIKACEAVDRGLGAVVAALEKVGGAMLVIADHGNCETMVDPVTGGPH----------TAHTTNPVPVILFGG--PEGAK----VHDGILADVAPTLLQLMNVPLPPE 496          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI2_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA V A +A D  V  II+A++K GG+ L+TADHGNAE M +   +GEP          T+HT  PV     G G   +VK    L NG L+++A T ++L G   P +
Sbjct:  412 VGHTGIFEAAVQAVEAVDTCVGRIIEALKKAGGVALITADHGNAEQM-ENQHTGEP---------HTAHTSNPVRCIYAGKG---EVK---ALENGKLSDLAPTLLDLLGVPKPEE 511          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.690e-13
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIA-IGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTGD++A + AC+A D+ +  ++ A++  GG  +VTADHGN E MV     G            T+HT   VP+A +GGP         T L +G LA++A T + L G + P +
Sbjct:  399 VGHTGDLDAAIKACEAVDQGLGEVVAALKDAGGAMIVTADHGNCELMVDPETGG----------AHTAHTTNLVPVALVGGPE-------GTALKDGRLADLAPTLLALMGLDQPEE 498          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  I++A+EKVGG  L+TADHGNAE M   +            Q  T+HT + VP+   G           ++  GG L+++A T + L G E P++
Sbjct:  405 VGHTGNFDAAVKACEAVDSCIGRIVEALEKVGGECLITADHGNAEQMTDESTG----------QAHTAHTSELVPLIYVGRD--------AEIEKGGRLSDLAPTMLTLMGQEVPAE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA   A +A DE +  ++ A+ +  G+ L+TADHGN+E M+     G            T+HT  PVP+ + G G   DVK R     G LA++A T +++ G+E P +
Sbjct:  404 VGHTGVFEAAKAAIEAIDECLGKVVPAVLEQNGVVLITADHGNSEQMIDYETGGP----------FTAHTTNPVPLIVIGLG---DVKLR----EGRLADLAPTMLDILGFEKPKE 502          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.294e-13
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  +++A+EKVGG  L+TADHGNAE M   +            Q  T+HT + +P+   G           ++ NGG L+++A T + L G + P +
Sbjct:  405 VGHTGNFDAAVKACEAVDTCIGRVVEALEKVGGECLITADHGNAEQMTDESTG----------QAHTAHTSELIPLIYVGRD--------AEIENGGRLSDLAPTMLTLMGQDVPEE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.074e-12
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA V A +A D+ +  I++A++++GG+ L+TADHGNAE M+  +K+GEP          T+HT  PV     G G   +VK    L  G L ++A T + L G   P +
Sbjct:  406 VGHTGIFEAAVKAVEAVDKCIGRIVEALKEIGGVALITADHGNAEQMID-SKTGEP---------HTAHTSNPVRCIYFGNG---EVK---ALKKGKLCDLAPTLLELIGIPKPQE 505          
The following BLAST results are available for this feature:
BLAST of DR908770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
GPMI_SILPO1.498e-1438.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARDP7.435e-1437.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAD2.825e-1339.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AGRT52.825e-1338.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METAC2.825e-1342.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST3.690e-1337.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEHH4.819e-1337.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTH4.819e-1337.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPA6.294e-1335.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC1.074e-1239.662,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16898 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908770 ID=DR908770; Name=DR908770; organism=Citrus sinensis; type=EST; length=583bp
GGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTG
CTGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGA
ATATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAG
GAACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCA
CGTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTG
CCAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAA
TGTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACT
ACGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGAC
TGGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCC
GTTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTG
ATACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTTGGAGGC
AGACAGAACAATATAGCTCAAAATTTATTTTTG
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