DR908770

Overview
NameDR908770
Unique NameDR908770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 50/114 (43.86%), Postives = 59/114 (51.75%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 343
            VGHTG  EA V A +A D  V  I+DA+EKVGG  L+TADHGN E M                Q  T+HT +PVP    G     +VK R     G LA+VA T + L G E P
Sbjct:  402 VGHTGVFEAAVKAVEALDTCVGRIVDALEKVGGEALITADHGNVEQMEDECTG----------QAHTAHTTEPVPFIYVG---KRNVKVR---EGGVLADVAPTMLKLLGLEKP 499          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D +V  ++ A+E VGG  L+TADHGNAE M                Q  T+HT + VP I +G P      K R    NG L++VA T ++L G E P +
Sbjct:  402 VGHTGNFDAAVKACEAVDHSVGRVVSALEAVGGECLITADHGNAEQMSDATTG----------QAHTAHTNELVPFIYVGRP-----AKAR----NGRLSDVAPTILHLIGMEQPDE 499          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf0-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 47/116 (40.52%), Postives = 61/116 (52.59%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGH+G  EA V A +  D  V  I++A+EKVGG  L+TADHGN E M   +            Q  T+HT +PVP    G     D+K R     G LA+VA T + L G E P++
Sbjct:  401 VGHSGVFEAAVKAVECLDTCVGRIVEALEKVGGEALITADHGNVEQMADESTG----------QAHTAHTTEPVPFIYVG---KRDLKVR---EGGVLADVAPTMLKLLGLEKPAE 500          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 42/117 (35.90%), Postives = 58/117 (49.57%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTGD+ A + AC+  D  +   ++A+ + GG  +VTADHGN E M+     G            T+HT  PVP I +GGP           L  G LA++A T + L G   P +
Sbjct:  398 VGHTGDLRAAMAACEEVDRGLGRAVEAVRQAGGAMIVTADHGNCETMIDPETGGPH----------TAHTTNPVPVILVGGPA-------GARLRAGRLADLAPTLLELMGLPQPEE 497          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  +++AI+KVGG  L+TADHGNAE M                Q  T+HT + VP    G         +T   +GG L++VA T ++L G E P++
Sbjct:  402 VGHTGNFDAAVKACEAVDTCIGRVVEAIKKVGGDCLITADHGNAEKMADETTG----------QAHTAHTSELVPFWHVGQ--------KTTARSGGTLSDVAPTMLHLMGMEQPAE 500          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_VIBPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio parahaemolyticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA   A +A DE+V  +++AI++VGG  L+TADHGNAE M+     G          V T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  403 VGHTGVYEAAEKAIEALDESVGKVVEAIKEVGGQLLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain KT2440) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 49/114 (42.98%), Postives = 59/114 (51.75%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 343
            VGHTG  EA V A +A D  V  I+DA++KVGG  L+TADHGN E M                Q  T+HT +PVP    G     +VK R     G LA+VA T + L G E P
Sbjct:  402 VGHTGVFEAAVKAVEALDTCVGRIVDALDKVGGEALITADHGNVEQMEDECTG----------QAHTAHTTEPVPFIYVG---KRNVKVR---EGGVLADVAPTMLKLLGLEKP 499          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPG (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain GB-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 49/114 (42.98%), Postives = 59/114 (51.75%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 343
            VGHTG  EA V A +A D  V  I+DA+EKVGG  L+TADHGN E M                Q  T+HT +PVP    G     ++K R     G LA+VA T + L G E P
Sbjct:  402 VGHTGVFEAAVKAVEALDTCVGRIVDALEKVGGEALITADHGNVEQMEDECTG----------QAHTAHTTEPVPFIYVG---KRNLKVR---DGGVLADVAPTMLQLLGLEKP 499          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHELP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  +++A+ KV G  L+TADHGNAE M                Q  T+HT + VP I +G  G           PNG L+++A T + L G   PS+
Sbjct:  405 VGHTGNFDAAVKACEAVDACIGRVVEALAKVDGECLITADHGNAEQMTDEQTG----------QAHTAHTSELVPLIYVGRKG--------EIAPNGRLSDLAPTMLTLMGQTVPSE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHEAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  ++DA+ KVGG  L+TADHGNAE M  R+ S          Q  T+HT + VP    G       +  +    G L+++A T +NL G + P++
Sbjct:  404 VGHTGNFDAAVKACEAVDTCIGRVVDALAKVGGECLITADHGNAEQM--RDPS--------TGQAHTAHTSELVPFIYVG-------RDASIAEGGRLSDIAPTMLNLMGQDIPAE 502          
The following BLAST results are available for this feature:
BLAST of DR908770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
GPMI_PSEP11.402e-1243.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_IDILO1.402e-1241.032,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPF1.831e-1240.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS52.392e-1235.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA62.392e-1238.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBPA3.124e-1239.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPK3.124e-1242.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPG3.124e-1242.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHELP4.080e-1237.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEAM4.080e-1237.932,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16898 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908770 ID=DR908770; Name=DR908770; organism=Citrus sinensis; type=EST; length=583bp
GGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTG
CTGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGA
ATATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAG
GAACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCA
CGTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTG
CCAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAA
TGTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACT
ACGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGAC
TGGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCC
GTTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTG
ATACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTTGGAGGC
AGACAGAACAATATAGCTCAAAATTTATTTTTG
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