DR908770

Overview
NameDR908770
Unique NameDR908770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain PA7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M   +            Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P++
Sbjct:  406 VGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQMEDESTG----------QAHTAHTCEPVPFVYVG-------KRKLSIREGGVLADVAPTMLTLMGLEQPAE 505          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_AKKM8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG +EA + AC+A D A++  +  + ++GG  L+TADHGNAE M  RN+ G P          T+HT   V +      + DD K +  L +G LA+VA T ++L G + P++
Sbjct:  404 VGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHM--RNEDGSP---------NTAHTTNLVDLIY----VADD-KDQVTLSDGILADVAPTLLSLMGLKQPAE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHESH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  +A V AC+A D  +  ++DA+ KV G  L+TADHGNAE M                Q  T+HT + VP I +G  G  ++        +G L+++A T + L G E PS+
Sbjct:  405 VGHTGSFDAAVKACEAVDTCIGRVVDALAKVDGECLITADHGNAEQMTDEQTG----------QAHTAHTSELVPLIYVGRNGSIEN--------DGRLSDLAPTMLTLMGEEVPSE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS185) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 42/116 (36.21%), Postives = 58/116 (50.00%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G     D         G L++VA T + L G   P++
Sbjct:  405 VGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRNATID-------EGGKLSDVAPTILTLIGEAIPAE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 42/116 (36.21%), Postives = 58/116 (50.00%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G     D         G L++VA T + L G   P++
Sbjct:  405 VGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRNATID-------EGGKLSDVAPTILTLIGEAIPAE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_DINSH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Dinoroseobacter shibae (strain DFL 12) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINL 325
            VGHTGD+EA   AC A D  +   + A+E  GG  +VTADHGN E M+     G            T+HTL PVP I +GGP           L  G LA++A T ++L
Sbjct:  398 VGHTGDLEAAKAACTAVDTGLGRALAALEVAGGAMIVTADHGNCETMIDPETGG----------THTAHTLNPVPVILVGGPE-------GATLAPGRLADLAPTILHL 489          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 47/118 (39.83%), Postives = 60/118 (50.85%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGG G   D     +L +GG LA+VA T + L   E   D
Sbjct:  425 VGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYGKDA---IELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 47/118 (39.83%), Postives = 60/118 (50.85%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGG G   D     +L +GG LA+VA T + L   E   D
Sbjct:  425 VGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYGKDA---IELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SYNPX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain WH8102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS 346
            VGHTG ++A   A    D  +  ++DA+ + GG  L+TADHGNAE           L++  + Q  T+HT  PVP I + G     PG  +D+  R D   GGLA++A T + +   E P+
Sbjct:  410 VGHTGVMDAATEAIATVDRCIGRLLDAVGRRGGTMLITADHGNAE-----------LMQGPDGQAWTAHTTNPVPCILVEGEQRKLPGHGNDISLRED---GGLADIAPTLLQILNLEQPA 516          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA V A +A D+ +  I++ +++ GG+ L+TADHGNAE+M+   K+GEP          T+HT  PV     G     ++K    L NG L +VA T + L G   P +
Sbjct:  416 VGHTGIFEAAVKAVEAVDKCIGRIVEVLKEKGGVALITADHGNAEEMIDL-KTGEP---------HTAHTSNPVKCIYFG---NSEIK---ALRNGKLCDVAPTILELLGIPKPQE 515          
The following BLAST results are available for this feature:
BLAST of DR908770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
GPMI_PSEA75.328e-1238.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AKKM85.328e-1238.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESH6.959e-1237.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB86.959e-1236.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB56.959e-1236.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DINSH6.959e-1240.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLSY6.959e-1239.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA6.959e-1239.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNPX9.088e-1236.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF9.088e-1238.792,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16898 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908770 ID=DR908770; Name=DR908770; organism=Citrus sinensis; type=EST; length=583bp
GGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTG
CTGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGA
ATATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAG
GAACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCA
CGTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTG
CCAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAA
TGTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACT
ACGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGAC
TGGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCC
GTTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTG
ATACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTTGGAGGC
AGACAGAACAATATAGCTCAAAATTTATTTTTG
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