DR908770

Overview
NameDR908770
Unique NameDR908770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus (strain YJ016) GN=gpmI PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G          + T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  403 VGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG----------IHTAHTSLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus GN=gpmI PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G          + T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  403 VGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG----------IHTAHTSLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG+ EAT+ A +  D  +  ++ A+   GG  L+ ADHGNAE           L+ D N    T+HT  PVP I + G     PG   DVK R+   NG LA+VA T + + G   P +
Sbjct:  399 VGHTGNYEATIRALETVDRCLGRLLAAVVDAGGTTLILADHGNAE-----------LMWDENGNPWTAHTTNPVPCILVEGERRKIPGCGGDVKLRS---NGTLADVAPTLLEILGLPQPPE 506          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_STRCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Streptomyces coelicolor GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLP------NGGLANVAATFINLHGYE 337
            VGHTG++ ATV AC+A D AV  I+ A    G   +   DHGNAE M K+         DG+++    HT  PVP+ I        V  RTD P         LA+VA T ++L G++
Sbjct:  398 VGHTGNLAATVTACEATDAAVDQILQAARNSGRWVVAVGDHGNAERMTKQ-------APDGSVRPYGGHTTNPVPLVI--------VPNRTDTPAPTLPGTATLADVAPTILHLLGHK 500          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SHEON (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella oneidensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G     D         G L++VA T ++L G   P++
Sbjct:  405 VGHTGNFDAAVKACEAVDACIGRVVEALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRDATID-------KGGKLSDVAPTILHLMGESIPAE 503          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. tomato GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 47/117 (40.17%), Postives = 60/117 (51.28%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGH+G +EA + A +  D  V  I DA+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P +
Sbjct:  401 VGHSGIMEAAIKAVEYLDVCVGRITDALEKVGGEALITADHGNVEQMT----------DDATGQAHTAHTSEPVPFVYVG-------KRQLKVREGGVLADVAPTMLQLLGMEKPQE 500          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_VIBHB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTG  EA   A +A DE+V  +++AI++V G  L+TADHGNAE M+     G          V T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  403 VGHTGVYEAAEQAIEALDESVGKVVEAIKEVSGQMLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_SYMTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Symbiobacterium thermophilum GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 343
            VGHTG +EA + A +A DE +  ++DA+   GG  ++ ADHGN + MV   ++G P          T+HTL PVP       L DD +    L  G LANVA T + + G   P
Sbjct:  403 VGHTGVLEAAIRAVEAVDECLGQVVDALLAKGGAAVIIADHGNCDQMVD-YETGAP---------HTNHTLNPVPCI-----LVDDQRLDAKLKPGVLANVAPTLLEIIGLPKP 501          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEU2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gpmI PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 46/117 (39.32%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGH+G +EA + A +  D  V  I +A+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G       K +  +  GG LA+VA T ++L G E P +
Sbjct:  401 VGHSGIMEAAIKAVECLDVCVGRIAEALEKVGGEALITADHGNVEQMT----------DDSTGQAHTAHTSEPVPFVYVG-------KRQLKVRQGGVLADVAPTMLHLLGMEKPQE 500          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_PSEE4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas entomophila (strain L48) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 47/117 (40.17%), Postives = 60/117 (51.28%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 349
            VGHTG  EA V A +A D  V  I++A+ KVGG  L+TADHGN E M                Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P++
Sbjct:  402 VGHTGVFEAAVKAVEALDSCVGRIVEALGKVGGEALITADHGNVEQMEDECTG----------QAHTAHTSEPVPFIYVG-------KRKVTVREGGVLADVAPTMLKLLGLEKPAE 501          
The following BLAST results are available for this feature:
BLAST of DR908770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
GPMI_VIBVY1.187e-1138.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVU1.187e-1138.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJB1.187e-1138.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STRCO1.187e-1138.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEON1.187e-1135.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSESM1.187e-1140.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBHB1.550e-1138.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYMTH1.550e-1138.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEU21.550e-1139.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEE41.550e-1140.172,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16898 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908770 ID=DR908770; Name=DR908770; organism=Citrus sinensis; type=EST; length=583bp
GGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTG
CTGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGA
ATATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAG
GAACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCA
CGTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTG
CCAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAA
TGTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACT
ACGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGAC
TGGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCC
GTTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTG
ATACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTTGGAGGC
AGACAGAACAATATAGCTCAAAATTTATTTTTG
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