DR908766

Overview
NameDR908766
Unique NameDR908766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.505e-46
Identity = 83/151 (54.97%), Postives = 112/151 (74.17%), Query Frame = 3
Query:   12 QEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE 464
            Q++ W  DP YF++  +SALA +K++ HA  GG +EV+G++ G    + I+V+D++ LPVEGTETRVNAQ ++YEY V Y +T    G     VGWYHSHPGYGCWLSGID  TQ LNQ FQ+P+LA+V+DP R+ ++G ++IGAFRT PE
Sbjct:   59 QQELWKQDPTYFQKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLA--IVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPE 207          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.326e-42
Identity = 83/162 (51.23%), Postives = 112/162 (69.14%), Query Frame = 3
Query:   33 DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLN 518
            +P +F++  IS LA  KM+ HA  GG IEVMG++ G T  D I+V D ++LPV+GTETRVNA  ++YEYMV Y   +    + +  VGWYHSHPGYGCWLS ID+ TQ LNQ +Q+P+LA+V+DP +++S   ++IGAFRT P   K  +E +  Y   PLN
Sbjct:   59 NPCHFQKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQY--LDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTLPS--KDNNEHVDYY---PLN 213          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.617e-39
Identity = 82/176 (46.59%), Postives = 111/176 (63.07%), Query Frame = 3
Query:   30 NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY--SQTNKQAGRLE---NAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTI----PLNKIED 530
            N P +++ V +S LA  K++ HA  GG IEVMG++ G   G+  ++ D F LPVEGTET VNA  ++YEYMV +      +   R E   N +GWYHSHPGY CWLS ID+ TQ LNQQ Q+P+LA+V+DP ++ +  KV IG+FRTY +  +  D    E  T      LNK+E+
Sbjct:   66 NSPLFYQNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQD--QNDDTNFYELNTTVFDSELNKLEN 239          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.196e-34
Identity = 72/147 (48.98%), Postives = 95/147 (64.63%), Query Frame = 3
Query:   45 FKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 455
            +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   68 YTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.196e-34
Identity = 72/147 (48.98%), Postives = 95/147 (64.63%), Query Frame = 3
Query:   45 FKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 455
            +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   68 YTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.196e-34
Identity = 72/147 (48.98%), Postives = 95/147 (64.63%), Query Frame = 3
Query:   45 FKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 455
            +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   68 YTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.843e-28
Identity = 71/142 (50.00%), Postives = 92/142 (64.79%), Query Frame = 3
Query:   36 PHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 455
            P   + + IS+LALLKM+ HAR+G  +EVMGLM G+  D   I V+D FA+P  GT   V A    ++  M+D     KQ GR E  +GWYHSHPG+GCWLS +DV+TQ   +Q Q   +AVV+DP ++V  GKV I AFRT
Sbjct:   25 PDTAETIHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDML---KQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSV-RGKVVIDAFRT 162          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.600e-27
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 3
Query:   27 VNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 455
            ++ P   + V IS+LALLKM+ HARSG  +EVMGLM G   D   I V D FA+P  GT   V +    Y+    +    K  GR EN VGWYHSHPG+GCWLS +DV+TQ   +      +AVV+DP ++V  GKV + AFR+
Sbjct:   20 LDHPDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK-GKVMLDAFRS 160          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.396e-27
Identity = 71/148 (47.97%), Postives = 93/148 (62.84%), Query Frame = 3
Query:   54 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PEGYKPPDEP 488
            V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFRT  P+      EP
Sbjct:   33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVK-GKVVIDAFRTINPQSMALNQEP 176          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.436e-27
Identity = 68/137 (49.64%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   48 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 452
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR
Sbjct:   29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 161          
The following BLAST results are available for this feature:
BLAST of DR908766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_ASHGO9.505e-4654.97COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA8.326e-4251.23COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_CANGA8.617e-3946.59COP9 signalosome complex subunit 5 OS=Candida glab... [more]
CSN5_YEAST2.196e-3448.98COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS72.196e-3448.98COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS12.196e-3448.98COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
PSDE_DICDI6.843e-2850.0026S proteasome non-ATPase regulatory subunit 14 OS... [more]
YPT5_CAEEL2.600e-2747.22Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
PSDE_CAEEL3.396e-2747.9726S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE4.436e-2749.6426S proteasome non-ATPase regulatory subunit 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16894 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-22_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908766 ID=DR908766; Name=DR908766; organism=Citrus sinensis; type=EST; length=583bp
CCAAGTTCCAGCAAGAGAAGCCCTGGGTCAATGACCCTCACTACTTCAAG
CGCGTGAAGATCTCCGCACTCGCCCTCCTCAAGATGGTCGTCCATGCGCG
ATCCGGTGGGACCATCGAGGTCATGGGCCTTATGCAAGGCAAAACCGACG
GCGACGCCATCATTGTCATGGACGCCTTTGCTTTGCCCGTTGAAGGTACC
GAAACCAGGGTTAATGCTCAGGCCGATGCTTATGAATATATGGTCGATTA
TTCCCAAACCAACAAACAGGCCGGACGTCTGGAGAATGCTGTTGGGTGGT
ACCATTCACATCCTGGCTATGGATGCTGGCTTTCGGGTATTGATGTTTCA
ACTCAAATGCTTAATCAGCAGTTTCAGGAGCCATTTTTGGCTGTTGTGAT
TGATCCTACTAGGACTGTTTCTGCTGGGAAAGTTGAGATTGGAGCTTTCA
GGACGTATCCTGAAGGATACAAGCCTCCGGATGAACCCATCTCTGAGTAT
CAGACCATTCCTTTGAATAAGATTGAAGACTTGGTGTGCATTGTAAACAG
TATTATTCATTGGGATATTACTTATTTTAAGTC
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