DR908766

Overview
NameDR908766
Unique NameDR908766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.436e-27
Identity = 68/137 (49.64%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   48 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 452
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR
Sbjct:   29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 161          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.793e-27
Identity = 68/137 (49.64%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   48 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 452
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR
Sbjct:   27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 159          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.793e-27
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   48 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 455
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V+ +A  + +  +     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFR+
Sbjct:   28 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRS 161          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.291e-26
Identity = 68/140 (48.57%), Postives = 89/140 (63.57%), Query Frame = 3
Query:   54 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG 467
            V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+TQ   +Q     +AVV+DP ++V  GKV I AFR    G
Sbjct:   27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFRLIDTG 162          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.686e-26
Identity = 68/140 (48.57%), Postives = 89/140 (63.57%), Query Frame = 3
Query:   54 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG 467
            V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+TQ   +Q     +AVV+DP ++V  GKV I AFR    G
Sbjct:   27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVK-GKVVIDAFRLIDTG 162          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.875e-26
Identity = 68/135 (50.37%), Postives = 87/135 (64.44%), Query Frame = 3
Query:   54 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 452
            V IS+LALLKM+ H+R+G  +EVMGLM G   D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV TQ   +Q     +AVV+DP ++V  GKV I AFR
Sbjct:   32 VYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFR 162          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 3
Query:   54 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 452
            V IS+LALLKM+ H R G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLS +D++TQ   +Q     +AVV+DP ++V  GKV I AFR
Sbjct:   30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDML---KQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVK-GKVVIDAFR 160          
BLAST of DR908766 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25
Identity = 63/134 (47.01%), Postives = 87/134 (64.93%), Query Frame = 3
Query:   54 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 452
            V+IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V +    ++  ++     K  GR E  VGWYHSHPG+GCWLS +D+STQ   ++  +  +AVV+DP ++V  GKV I AFR
Sbjct:   21 VQISSLALLKMLKHGRAGIPLEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQ--MEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVK-GKVVIDAFR 151          
The following BLAST results are available for this feature:
BLAST of DR908766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PSDE_HUMAN4.436e-2749.6426S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME5.793e-2749.6426S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_ARATH5.793e-2747.4526S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_YEAST1.291e-2648.5726S proteasome regulatory subunit RPN11 OS=Sacchar... [more]
RPN11_CANGA1.686e-2648.5726S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_ASHGO2.875e-2650.3726S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
RPN11_SCHPO8.365e-2649.6326S proteasome regulatory subunit rpn11 OS=Schizos... [more]
RPN11_ENCCU1.427e-2547.0126S proteasome regulatory subunit RPN11 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16894 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-22_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908766 ID=DR908766; Name=DR908766; organism=Citrus sinensis; type=EST; length=583bp
CCAAGTTCCAGCAAGAGAAGCCCTGGGTCAATGACCCTCACTACTTCAAG
CGCGTGAAGATCTCCGCACTCGCCCTCCTCAAGATGGTCGTCCATGCGCG
ATCCGGTGGGACCATCGAGGTCATGGGCCTTATGCAAGGCAAAACCGACG
GCGACGCCATCATTGTCATGGACGCCTTTGCTTTGCCCGTTGAAGGTACC
GAAACCAGGGTTAATGCTCAGGCCGATGCTTATGAATATATGGTCGATTA
TTCCCAAACCAACAAACAGGCCGGACGTCTGGAGAATGCTGTTGGGTGGT
ACCATTCACATCCTGGCTATGGATGCTGGCTTTCGGGTATTGATGTTTCA
ACTCAAATGCTTAATCAGCAGTTTCAGGAGCCATTTTTGGCTGTTGTGAT
TGATCCTACTAGGACTGTTTCTGCTGGGAAAGTTGAGATTGGAGCTTTCA
GGACGTATCCTGAAGGATACAAGCCTCCGGATGAACCCATCTCTGAGTAT
CAGACCATTCCTTTGAATAAGATTGAAGACTTGGTGTGCATTGTAAACAG
TATTATTCATTGGGATATTACTTATTTTAAGTC
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