CN189541

Overview
NameCN189541
Unique NameCN189541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.363e-52
Identity = 102/228 (44.74%), Postives = 144/228 (63.16%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNIEA 690
            +L+  +L FRLLRQ G  +S +VF  FKD+ G FK+ L  D +GMLSLYEA++  + GE+IL+EA  F+T HL+  V Q+     LA  +NH+L  PL   +PRLEAR+F+++     D   N  LL FA+LDFNI            + WWK       L +ARDR VE +FW +G  F+PQ+ + R++ T++  +++ IDD YD YGTL+EL LFT+ V+RW+I A
Sbjct:  149 NLYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGMLSLYEASFFLIEGENILEEARDFSTKHLEEYVKQNK-EKNLATLVNHSLEFPLHWRMPRLEARWFINIYRHNQD--VNPILLEFAELDFNIVQAAHQADLKQVSTWWKSTGLVENLSFARDRPVENFFWTVGLIFQPQFGYCRRMFTKVFALITTIDDVYDVYGTLDELELFTDVVERWDINA 373          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.877e-47
Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDE-GRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLV----AQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNIE 687
            DL+  +L FRLLRQ G ++  ++F  FK+ + G FK+++ ND+ G L LYEA++   +GE IL+EA  FTT  LK       + ++    ++  +NHAL  PL+  + R EA++F+  I      + N TLL FAKLDFN+            ++WWKD     KLP+ RDRLVE + W +G  FEPQ+++ R + T+L  +L+IIDD +D YGTLEEL LFT A+QRW+++
Sbjct:  168 DLYATALQFRLLRQYGFEVPQEIFNNFKNHKTGEFKANISNDIMGALGLYEASFHGKKGESILEEARIFTTKCLKKYKLMSSSNNNNMTLISLLVNHALEMPLQWRITRSEAKWFIEEIYERKQDM-NPTLLEFAKLDFNMLQSTYQEELKVLSRWWKDSKLGEKLPFVRDRLVECFLWQVGVRFEPQFSYFRIMDTKLYVLLTIIDDMHDIYGTLEELQLFTNALQRWDLK 398          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.131e-47
Identity = 100/231 (43.29%), Postives = 143/231 (61.90%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND-VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDH----VTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDF-TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            DL+  +L FRLLR+ G  I  ++F  FKD+ G+FK+S+ ND ++G+L+LYEA++    GE+IL+EA  FTT +LK  V        +   +A  + HAL  PL     R EA++F+     T D   N TLL FAKLDFN+            ++WW+  +    K+ YARDRLVE + W +G  FEPQ++  R+I  ++  +++IIDD YD YGTLEEL LFT+AV+RW+
Sbjct:  162 DLYATALEFRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEASFYVKNGENILEEARVFTTEYLKRYVMMIDQNIILNDNMAILVRHALEMPLHWRTIRAEAKWFIEEYEKTQDK--NGTLLEFAKLDFNMLQSIFQEDLKHVSRWWEHSELGKNKMVYARDRLVEAFLWQVGVRFEPQFSHFRRISARIYALITIIDDIYDVYGTLEELELFTKAVERWD 390          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.539e-46
Identity = 96/228 (42.11%), Postives = 142/228 (62.28%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKL--AEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            +L+  SL FRLLRQ G  +S +VF  FKDD+G F   + +D +G+LSL+EA+Y ++ GE I++EA  FT+ HLK ++   ++   +  AEQ   AL  PL   +P LEAR+F+ +     D   N  LL  AK++FN             + WWKD     KL +AR+RLV  + W +G  FEPQ+A+ R+++T    ++++IDD YD YGTL+EL +FT+AV+RW+I
Sbjct:  144 NLYATSLEFRLLRQHGYPVSQEVFNGFKDDQGGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKNMEEDVFVAEQAKRALELPLHWKVPMLEARWFIHIYERREDK--NHLLLELAKMEFNTLQAIYQEELKEISGWWKDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVERWDI 366          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: GBIS2_ARATH ((Z)-gamma-bisabolene synthase 2 OS=Arabidopsis thaliana GN=TPS13 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.374e-42
Identity = 90/228 (39.47%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 EADLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLP-YARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            E DL T+S+ FR+ R  G  +   VF++F  D+G+F+ SL  D +G+LSLYEAA++    ++ILDEA+ FT++HLKSL+      P +   I + LY P R  +  + AR ++S      DH  +K LL  AKL+F +             KWW +L  T+K P   R+R+VE +   L  YFEPQ++ GR I  + NY+L+I+DD  D Y ++ EL+   + V+RWN
Sbjct:  104 ENDLSTISIMFRVFRTYGHNLPSSVFKRFTGDDGKFERSLTEDAKGILSLYEAAHLGTTTDYILDEALEFTSSHLKSLLVGGMCRPHILRLIRNTLYLPQRWNMEAVIAREYISFYEQEEDH--DKMLLRLAKLNFKLLQLHYIKELKTFIKWWMELGLTSKWPSQFRERIVEAWLAGLMMYFEPQFSGGRVIAAKFNYLLTILDDACDHYFSIPELTRLVDCVERWN 329          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.374e-42
Identity = 91/232 (39.22%), Postives = 137/232 (59.05%), Query Frame = 1
Query:    1 EADLHTVSLHFRLLRQQGIKISCDVFEKFKD--DEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIA-FTTTHLKSLVA-QDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            E DLH  SL FRLLRQ G  +S ++F+   D  +   FK+   N++ G++SLYEA+Y++ + +  L + I  F T  ++  V  +D    ++ E+  HAL  P    + RL+ R+++       D   N  L+ FAK+DFNI            ++WWKD   T +LP+ RDR+VE YFW +G  +EPQ+ + R+IMT +N +++ IDD YD YGTLEEL LFT  V+ W++
Sbjct:  140 EEDLHATSLEFRLLRQHGFDVSENIFDVIIDQIESNTFKT---NNINGIISLYEASYLSTKSDTKLHKVIRPFATEQIRKFVDDEDTKNIEVREKAYHALEMPYHWRMRRLDTRWYIDAYEKKHD--MNLVLIEFAKIDFNIVQAAHQEDLKYVSRWWKDTCLTNQLPFVRDRIVENYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIYGTLEELELFTSMVENWDV 366          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.374e-42
Identity = 91/229 (39.74%), Postives = 134/229 (58.52%), Query Frame = 1
Query:    1 EADLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVT-PKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKL-PYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            E  LHT+S  FR+ R  G  +S DVF+ FK D+G+FK SLI DV+GMLS YEA +     +HILDEA++FT  HL+SL      + P +++ I +AL+ P  + +  L AR ++S      DH  ++TLL  AKL+F              T WW  LD T+ L P  R+R VE +F  L  YFEPQ++ GR +  +L  +++ +DD  D YG++ E+    + ++RW+
Sbjct:  107 ENKLHTISTIFRVFRTYGYYMSSDVFKIFKGDDGKFKESLIEDVKGMLSFYEAVHFGTTTDHILDEALSFTLNHLESLATGRRASPPHISKLIQNALHIPQHRNIQALVAREYISFYEHEEDH--DETLLKLAKLNFKFLQLHYFQELKTITMWWTKLDHTSNLPPNFRERTVETWFAALMMYFEPQFSLGRIMSAKLYLVITFLDDACDTYGSISEVESLADCLERWD 333          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: GBIS1_ARATH ((Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.100e-42
Identity = 90/228 (39.47%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 EADLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLP-YARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            E DL T+S+ FR+ R  G  +   VF++F  D+G+F+ SL  D +G+LSLYEAA++    ++ILDEA+ FT++HLKSL+A     P +   I + LY P R  +  + AR ++S      DH  +K LL  AKL+F +             KWW +L  T+K P   R+R+VE +   L  YFEPQ++ GR I  + NY+L+I+DD  D Y ++ EL+     V+RW+
Sbjct:  104 EKDLSTISIMFRVFRTYGHNLPSSVFKRFTGDDGKFQQSLTEDAKGILSLYEAAHLGTTTDYILDEALKFTSSHLKSLLAGGTCRPHILRLIRNTLYLPQRWNMEAVIAREYISFYEQEEDH--DKMLLRLAKLNFKLLQLHYIKELKSFIKWWMELGLTSKWPSQFRERIVEAWLAGLMMYFEPQFSGGRVIAAKFNYLLTILDDACDHYFSIHELTRLVACVERWS 329          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.902e-40
Identity = 89/231 (38.53%), Postives = 132/231 (57.14%), Query Frame = 1
Query:    1 EADLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR-FKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNIEA 690
            E+DL++ +L F+LLRQ    +S +VF+ FK+D+G  FK SL++D +G+L LYEA++++ +GE  L  A  F T  L   V  D     L   I  AL  P    +    AR F+       D   N T+L  AKLDFN+            ++WW       +LP+ RDR+VE Y+W  G     ++ + R ++T++N +++ IDD +D YGTLEEL LFT A+QRW+IE+
Sbjct:  144 ESDLYSTALRFKLLRQYDFSVSQEVFDCFKNDKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLHLARDFATKFLHKRVLVDKDI-NLLSSIERALELPTHWRVQMPNARSFIDAYKRRPD--MNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERREHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIES 371          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.950e-40
Identity = 91/231 (39.39%), Postives = 133/231 (57.58%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG-RFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQ--DHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNIEA 690
            DL+  +L FRLLRQ G  IS DVF  FK+++G  FK+SL  D +GML LYEA+++  +GE  L+ A  F T  L+  + +  + +   L   I H+L  PL   +  +EAR+F+       D   N  +   AKL+FNI            ++WW  L F  KLP+ RDRLVE +FW +G +   Q+ + RK+   +  + ++IDD YD YGTL+EL LFT+  +RW+ E+
Sbjct:  149 DLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD--MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTES 377          
The following BLAST results are available for this feature:
BLAST of CN189541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
MYRS_QUEIL7.363e-5244.74Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS1_CANSA1.877e-4742.67(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
TPS2_CANSA7.131e-4743.29(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
RLC1_CITLI3.539e-4642.11(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
GBIS2_ARATH2.374e-4239.47(Z)-gamma-bisabolene synthase 2 OS=Arabidopsis tha... [more]
CINS_ARATH2.374e-4239.221,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
BARS_ARATH2.374e-4239.74Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
GBIS1_ARATH3.100e-4239.47(Z)-gamma-bisabolene synthase 1 OS=Arabidopsis tha... [more]
SCS_SALOF2.902e-4038.531,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
BPPS_SALOF4.950e-4039.39(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189541 ID=CN189541; Name=CN189541; organism=Citrus sinensis; type=EST; length=691bp
GAGGCTGATCTCCACACCGTTTCCCTTCATTTTCGATTGCTTAGGCAGCA
AGGAATCAAGATTTCATGTGATGTGTTTGAGAAGTTCAAAGATGATGAGG
GTAGATTCAAGTCATCGTTGATAAACGATGTTCAAGGGATGTTAAGTTTG
TACGAGGCAGCATACATGGCAGTTCGCGGAGAACATATATTAGATGAAGC
CATTGCTTTCACTACCACTCACCTGAAGTCATTGGTAGCTCAGGATCATG
TAACCCCTAAGCTTGCGGAACAGATAAATCATGCTTTATACCGTCCTCTT
CGTAAAACCCTACCAAGATTAGAGGCGAGGTATTTTATGTCCATGATCAA
TTCAACAAGTGATCATTTATACAATAAAACTCTGCTGAATTTTGCAAAGT
TAGATTTTAACATATTGCTAGAGCTGCACAAGGAGGAACTCAATGAATTA
ACAAAGTGGTGGAAAGATTTAGACTTCACTACAAAACTACCTTATGCAAG
AGACAGATTAGTGGAGTTATATTTTTGGGATTTAGGGACATACTTCGAGC
CTCAATATGCATTTGGGAGAAAGATAATGACCCAATTAAATTACATATTA
TCCATCATAGATGATACTTATGATGCGTATGGTACACTTGAAGAACTCAG
CCTCTTTACTGAAGCAGTTCAAAGATGGAATATTGAGGCCG
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