CN189541

Overview
NameCN189541
Unique NameCN189541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.085e-30
Identity = 78/245 (31.84%), Postives = 128/245 (52.24%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRF---KSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPK------LAEQINHALYRPLRKTLPRLEARYFMSMINSTSD----------HLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            D+   ++  R+LR  G  +S DV E F+D++G F          V   L+LY  + +   GE I++EA  FTT HL++ +A+++   K      L  ++ +A+  P  +++PRLEAR ++    S             ++ N+  L  AKLDFN+              WW++  F   L + R R VE+YF    + FEP++A  R    + + +  I+DD YD +G+L++L LF+EAV+RW+I
Sbjct:  405 DVDDTAMGLRILRLHGYNVSSDVLENFRDEKGDFFCFAGQTQIGVTDNLNLYRCSQVCFPGEKIMEEAKTFTTNHLQNALAKNNAFDKWAVKKDLPGEVEYAIKYPWHRSMPRLEARSYIEQFGSNDVWLGKTVYKMLYVSNEKYLELAKLDFNMVQALHQKETQHIVSWWRESGFND-LTFTRQRPVEMYFSVAVSMFEPEFAACRIAYAKTSCLAVILDDLYDTHGSLDDLKLFSEAVRRWDI 648          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29
Identity = 77/240 (32.08%), Postives = 124/240 (51.67%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND-------VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQD----HVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL---YNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            DL+  +L FR LR     +S  V + FKD+ G+F  +   +       V+ MLSL  A+ ++  GE +++EA AFT  +L  ++A       V   L  ++ +AL  P   ++PR EAR F+ +       L    N+ +L  AKLDFNI            T+WW+D   + +L + R R VE Y W +   FEP+++  R    +   + +++DD YD + TL E+ + TE V+RW++
Sbjct:  117 DLNATALGFRALRLHRYNVSSGVLKNFKDENGKFFCNFTGEEGRGDKQVRSMLSLLRASEISFPGEKVMEEAKAFTREYLNQVLAGHGDVTDVDQSLLREVKYALEFPWHCSVPRWEARSFLEIYGHNHSWLKSNINQKMLKLAKLDFNILQCKHHKEIQFITRWWRDSGIS-QLNFYRKRHVEYYSWVVMCIFEPEFSESRIAFAKTAILCTVLDDLYDTHATLHEIKIMTEGVRRWDL 355          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 78/238 (32.77%), Postives = 135/238 (56.72%), Query Frame = 1
Query:    4 ADLHTVSLHFRLLRQQGIKISCDVFEKFKDDE--GRFKSSLIN---DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMI--NSTSDHLYN--KTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNIEA 690
            ADL++ +L FR+LR  G  +S DV E FK+++  G+F  S I    +++ +L+L+ A+ +A  GE +++EA  F+  +LK  + Q+     L+ +I + L    +  +PRLE R ++ ++  N   + LY   + LL  AKL+FNI            ++WWKD  F+  L ++R R VE Y        + +++  R    ++ ++++++DD YD +GT+EEL LFT A +RW+  A
Sbjct:  172 ADLNSTALGFRILRLHGYSVSSDVLEHFKEEKEKGQFVCSAIQTEEEIKSVLNLFRASLIAFPGEKVMEEAEIFSKIYLKEAL-QNIAVSSLSREIEYVLEDGWQTNMPRLETRNYIDVLGENDRDETLYMNMEKLLEIAKLEFNIFHSLQQRELKDLSRWWKDSGFS-HLTFSRHRHVEFYALASCIETDRKHSGFRLGFAKMCHLITVLDDIYDTFGTMEELELFTAAFKRWDPSA 407          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28
Identity = 77/237 (32.49%), Postives = 126/237 (53.16%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI----NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTS-------DHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            DL++ +L  R LR  G  +S DV E FKD +G F    I       + +L+LY A+ +A  GE +++EA  F+ ++LK ++ +  V+   + +I + L       LPRLEAR ++ +    S        ++  + LL  AKL+FNI            ++WWKD   ++ L + R R VE Y        EP+++  R    +  ++L+++DD YD +GTL+EL LFT A +RW++
Sbjct:  178 DLNSTALALRTLRLHGYNVSSDVLEYFKDQKGHFACPAILTEGQITRSVLNLYRASLVAFPGEKVMEEAEIFSASYLKEVLQKIPVS-SFSREIEYVLEYGWHTNLPRLEARNYIDVYGQDSYESSNEMPYVNTQKLLKLAKLEFNIFHSLQQKELQYISRWWKD-SCSSHLTFTRHRHVEYYTMASCISMEPKHSAFRLGFVKTCHLLTVLDDMYDTFGTLDELQLFTTAFKRWDL 412          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 75/237 (31.65%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI----NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYN-------KTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            DL++ +L  R LR  G  +S DV E FKD++G F    I       + +L+LY A+ +A  GE +++EA  F+ ++LK ++ +  V+  L+ +I + L       LPRLEAR ++ +   +     N       K LL  AKL+FNI            ++WWK+   +++L + R R VE Y         P+++  R    ++ ++++++DD YD +GT+ EL LFT+A++RW++
Sbjct:  178 DLNSTALALRTLRLHGYNVSSDVLEYFKDEKGHFACPAILTEGQITRSVLNLYRASLVAFPGEKVMEEAEIFSASYLKKVLQKIPVS-NLSGEIEYVLEYGWHTNLPRLEARNYIEVYEQSGYESLNEMPYMNMKKLLQLAKLEFNIFHSLQLRELQSISRWWKESG-SSQLTFTRHRHVEYYTMASCISMLPKHSAFRMEFVKVCHLVTVLDDIYDTFGTMNELQLFTDAIKRWDL 412          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSDV_ABIGR (Abietadiene synthase, chloroplastic OS=Abies grandis GN=ag22 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.328e-28
Identity = 75/245 (30.61%), Postives = 127/245 (51.84%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQG---MLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLA------EQINHALYRPLRKTLPRLEARYFMSMINSTS----------DHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            D+   ++  R+LR  G  +S DV + F+D+ G F   L    +G   ML++   ++++  GE I++EA   T  +L++ +       K A       ++ +AL  P  K++PRLEAR ++                  ++ N+  L  AKLDFN              +WWK   FT  L + R+R+ E+YF      FEP+++  R++ T+ +    I+DD YDA+G+L++L LFTE+V+RW++
Sbjct:  402 DIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTD-LNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDL 645          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 74/245 (30.20%), Postives = 126/245 (51.43%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQG---MLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLA------EQINHALYRPLRKTLPRLEARYFMSMINSTS----------DHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            D+   ++  R+LR  G  +S DV + F+D+ G F   L    +G   ML++   +++A  GE I++EA   T  +L++ +     + K A       ++ +AL  P  +++PRLEAR ++                  ++ N+  L  AKLDFN              +WW    F+ +L + R+R+ E+YF      FEP++A  R + T+ +    I+DD YDA+GTL+ L LF+E+V+RW++
Sbjct:  383 DIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKLCTERYLRNALEDGGASDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIENYGPNDVWLGKTMYMMPNISNEKYLELAKLDFNRVQFFHRQELQDIRRWWNSSGFS-QLGFTRERVAEIYFSPASFLFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDNLKLFSESVKRWDL 626          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 81/242 (33.47%), Postives = 123/242 (50.83%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN---DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVT-PKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDH-------------LYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            DL+T +L  R LR  G  +S DV   FKD+ GRF SS      +++ +++L+ A+ +A   E  +D+A  F   +L+  +A    T  KL ++I + +  P   ++PRLEAR   S I+S  D+             L N   L  AKLDFNI            T+WWK+      + + R R+ E+YF      FEP+Y+  R   T++  +  + DD  D + TL+EL  FTE V+RW+
Sbjct:  401 DLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEAR---SYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWD 636          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 74/227 (32.60%), Postives = 119/227 (52.42%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN--STSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            DLH ++L FRLLRQ+G  +   +F+   D +G FK  + NDV+G+  L+EA+ + V GE  LD A  FT + L  L +      K  ++I  +L +P  KT+  L ++ F SMI      D  + ++LL  A++D                KWW +L     +  AR + ++ + W +    +P     R  +T+   ++ +IDD +D YG LEEL++FT  V+RW+
Sbjct:  130 DLHEIALRFRLLRQEGHYVQESIFKNILDKKGGFKDVVKNDVKGLTELFEASELRVEGEETLDGAREFTYSRLNELCSGRESHQK--QEIMKSLAQPRHKTVRGLTSKRFTSMIKIAGQEDPEWLQSLLRVAEIDSIRLKSLTQGEMSQTFKWWTELGLEKDVEKARSQPLKWHTWSMKILQDPTLTEQRLDLTKPISLVYVIDDIFDVYGELEELTIFTRVVERWD 354          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 73/245 (29.80%), Postives = 126/245 (51.43%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQG---MLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLA------EQINHALYRPLRKTLPRLEARYFMSMINSTS----------DHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            D+   ++  R+LR  G  +S DV + F+D+ G F   L    +G   ML++   +++A  GE I++EA   T  +L++ +       K A       ++ +AL  P  +++PRLEAR ++                  ++ N+  L  AKLDFN              +WW    FT +L + R+R+ E+YF      FEP++A  R + T+ +    I+DD YDA+GTL++L LF+++V++W++
Sbjct:  392 DIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKTCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIEHYGPNDVWLGKTMYMMPYISNEKYLELAKLDFNHVQSLHQKELRDLRRWWTSSGFT-ELKFTRERVTEIYFSPASFMFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDDLKLFSDSVKKWDL 635          
The following BLAST results are available for this feature:
BLAST of CN189541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
TPSD1_GINBI2.085e-3031.84Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
TPSD4_ABIGR1.035e-2932.08Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
TPSD9_ABIGR6.706e-2932.77Terpinolene synthase, chloroplastic OS=Abies grand... [more]
TPSDB_ABIGR1.144e-2832.49Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
TPSDA_ABIGR1.494e-2831.65Limonene synthase, chloroplastic OS=Abies grandis ... [more]
TPSDV_ABIGR3.328e-2830.61Abietadiene synthase, chloroplastic OS=Abies grand... [more]
TPSD1_PINTA7.414e-2830.20Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TASY_TAXBR9.683e-2833.47Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
LINS_ARATH9.683e-2832.60Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
TPSD1_PICAB1.652e-2729.80Levopimaradiene synthase, chloroplastic OS=Picea a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189541 ID=CN189541; Name=CN189541; organism=Citrus sinensis; type=EST; length=691bp
GAGGCTGATCTCCACACCGTTTCCCTTCATTTTCGATTGCTTAGGCAGCA
AGGAATCAAGATTTCATGTGATGTGTTTGAGAAGTTCAAAGATGATGAGG
GTAGATTCAAGTCATCGTTGATAAACGATGTTCAAGGGATGTTAAGTTTG
TACGAGGCAGCATACATGGCAGTTCGCGGAGAACATATATTAGATGAAGC
CATTGCTTTCACTACCACTCACCTGAAGTCATTGGTAGCTCAGGATCATG
TAACCCCTAAGCTTGCGGAACAGATAAATCATGCTTTATACCGTCCTCTT
CGTAAAACCCTACCAAGATTAGAGGCGAGGTATTTTATGTCCATGATCAA
TTCAACAAGTGATCATTTATACAATAAAACTCTGCTGAATTTTGCAAAGT
TAGATTTTAACATATTGCTAGAGCTGCACAAGGAGGAACTCAATGAATTA
ACAAAGTGGTGGAAAGATTTAGACTTCACTACAAAACTACCTTATGCAAG
AGACAGATTAGTGGAGTTATATTTTTGGGATTTAGGGACATACTTCGAGC
CTCAATATGCATTTGGGAGAAAGATAATGACCCAATTAAATTACATATTA
TCCATCATAGATGATACTTATGATGCGTATGGTACACTTGAAGAACTCAG
CCTCTTTACTGAAGCAGTTCAAAGATGGAATATTGAGGCCG
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