CN189541

Overview
NameCN189541
Unique NameCN189541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 71/237 (29.96%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFK---SSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN---------STSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            D+++ +  FR LR  G  +S +V + F+D  G+F    S+   D++ +L+LY A+++A  GE +++EA  F++ +LK  V +  V+  L+++I++ L       +PRLE R ++ +             + +L ++ LL  AKL+FNI            ++WW       +L + R R VE Y        EP+++  R    +  ++++++DD YD +GT++E+ LF EAV+RWN
Sbjct:  170 DVNSTASGFRTLRLHGYSVSSEVLKVFQDQNGQFAFSPSTKERDIRTVLNLYRASFIAFPGEKVMEEAEIFSSRYLKEAVQKIPVS-SLSQEIDYTLEYGWHTNMPRLETRNYLDVFGHPTSPWLKKKRTQYLDSEKLLELAKLEFNIFHSLQQKELQYLSRWWIHSGLP-ELTFGRHRHVEYYTLSSCIATEPKHSAFRLGFAKTCHLITVLDDIYDTFGTMDEIELFNEAVRRWN 404          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 74/245 (30.20%), Postives = 123/245 (50.20%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQG---MLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLA------EQINHALYRPLRKTLPRLEARYFMSMINSTS----------DHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWNI 684
            D+   ++  R+LR  G  +S DV + F+D+ G F   L    +G   ML++   +++A  GE I+ EA   T  +L++ +       K A       ++ +AL  P  +++PRLEAR ++                  ++ N   L  AKLDFN              +WWK    + +L + R+R+ E+YF      FEP++A  R + T+++    I+DD YDA+GTL+ L LF+E V+RW++
Sbjct:  400 DIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMQEAKLCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIEHYGPNDVWLGKTMYMMPYISNLKYLELAKLDFNHVQSLHQKELRDLRRWWKSSGLS-ELKFTRERVTEIYFSAASFIFEPEFATCRDVYTKISIFTVILDDLYDAHGTLDNLELFSEGVKRWDL 643          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 81/242 (33.47%), Postives = 122/242 (50.41%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN---DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVT-PKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDH-------------LYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            DL+T +L  R LR  G  +S DV   FKD+ GRF SS      +++ +++L+ A+ +A   E  +D+A  F   +L+  +A    T  KL ++I + +  P   ++PRLEAR   S I+S  D              L N   L  AKLDFNI            T+WWK+      + + R R+ E+YF      FEP+Y+  R   T++  +  + DD  D + TL+EL  FTE V+RW+
Sbjct:  401 DLNTTALGLRTLRTHGYDVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDEGAMDDARKFAEPYLRDALATKISTNTKLYKEIEYVVEYPWHMSIPRLEAR---SYIDSYDDDYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWD 636          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 80/242 (33.06%), Postives = 120/242 (49.59%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN---DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVT-PKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDH-------------LYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            DL+T +L  R LR  G  +S DV   FKD+ GRF SS      +++ ++ L+ A+ +A   E  +D+A  F   +L+  +A    T  KL ++I + +  P   ++PR EAR   S I+S  D              L N   L  AKLDFNI            T+WWK+      + + R R+ E+YF      FEP+Y+  R   T++  +  + DD  D + TL+EL  FTE V+RW+
Sbjct:  401 DLNTTALGLRTLRTHGYDVSSDVLNNFKDENGRFFSSAGQTHVELRSVVILFRASDLAFPDEGAMDDARKFAEPYLRDALATKISTNTKLFKEIEYVVEYPWHMSIPRSEAR---SYIDSYDDDYVWERKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWD 636          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 60/225 (26.67%), Postives = 101/225 (44.89%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR---FKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHL------KSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTL-----------LNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTY 621
            D+   ++ FRLLRQ G ++S DVF+ F + EG    F       V GM +LY A+ +A   E IL  A  F+  +L      + L+ +  +   L  +I  AL  P   +LPR+E R+++      +D    KTL           L  AK D+N              KW+++ +  ++    R  L+E Y+    T FE + +  R +  + + ++  I  ++
Sbjct:  377 DIDDTAMAFRLLRQHGYQVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-NRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSF 599          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: KSL2_ORYSJ (Ent-kaurene synthase-like 2 OS=Oryza sativa subsp. japonica GN=KSL2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 60/239 (25.10%), Postives = 109/239 (45.61%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLYEAAYMAV-RGEHILDEAIAFTTTHLKS-LVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLY---------NKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            D+ T  + FR+LR  G  +S D    F +    F +SL   +ND + +L L++A+ +++   E ILD   ++T   LK  L++       L+E++ +AL  P    L RL+ +  +   + TS  +          N+ ++     DF+               W K+     +L +AR +L   YF    T F P+ +  R +  +   + +++DD +D  G+ EEL      V++W+
Sbjct:  254 DMQTCGMAFRMLRMNGYDVSSDELSHFSEPSS-FHNSLQGYLNDTRSLLELHKASKVSIAEKEVILDNIGSWTGCLLKEQLLSSAMKRNPLSEEVEYALEFPFYTILDRLDHKRNIEHFDITSSQMLETAYLPCHSNEEIMALGVRDFSSSQFIFQEELQQLNSWVKESRLD-QLQFARQKLDYFYFSAAATIFTPELSDVRILWAKNGVLTTVVDDFFDVGGSKEELENLVALVEKWD 490          
BLAST of CN189541 vs. ExPASy Swiss-Prot
Match: KS1_ORYSJ (Ent-kaur-16-ene synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=KS1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 59/239 (24.69%), Postives = 107/239 (44.77%), Query Frame = 1
Query:    7 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLYEAAYMAV-RGEHILDEAIAFTTTHLKSLVAQDHVTPK-LAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLY---------NKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQRWN 681
            D+ T ++ FRLLR  G  +S        +    F+ SL   +ND + ++ LY+A+ ++    E ILD   +++ + LK  V  + V    + E++ +AL  P   TL RL+ +  +   ++    +          N+ +L  A  DF+               W KD +   +LP+AR +L   Y     T F  + +  R    +   + +++DD +D  G+ EEL      V++W+
Sbjct:  283 DITTCAMAFRLLRMNGYHVSSVELSPVAEASS-FRESLQGYLNDKKSLIELYKASKVSKSENESILDSIGSWSGSLLKESVCSNGVKKAPIFEEMKYALKFPFYTTLDRLDHKRNIERFDAKDSQMLKTEYLLPHANQDILALAVEDFSSSQSIYQDELNYLECWVKD-EKLDQLPFARQKLTYCYLSAAATIFPRELSEARIAWAKNGVLTTVVDDFFDLGGSKEELENLIALVEKWD 519          
The following BLAST results are available for this feature:
BLAST of CN189541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
TPSD8_ABIGR4.806e-2729.96Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
TPSD2_PICAB4.806e-2730.20Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
TASY_TAXBA4.806e-2733.47Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
TASY_TAXCH5.313e-2633.06Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
KSA_ARATH1.357e-1326.67Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
KSL2_ORYSJ3.024e-1325.10Ent-kaurene synthase-like 2 OS=Oryza sativa subsp.... [more]
KS1_ORYSJ3.697e-1124.69Ent-kaur-16-ene synthase, chloroplastic OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189541 ID=CN189541; Name=CN189541; organism=Citrus sinensis; type=EST; length=691bp
GAGGCTGATCTCCACACCGTTTCCCTTCATTTTCGATTGCTTAGGCAGCA
AGGAATCAAGATTTCATGTGATGTGTTTGAGAAGTTCAAAGATGATGAGG
GTAGATTCAAGTCATCGTTGATAAACGATGTTCAAGGGATGTTAAGTTTG
TACGAGGCAGCATACATGGCAGTTCGCGGAGAACATATATTAGATGAAGC
CATTGCTTTCACTACCACTCACCTGAAGTCATTGGTAGCTCAGGATCATG
TAACCCCTAAGCTTGCGGAACAGATAAATCATGCTTTATACCGTCCTCTT
CGTAAAACCCTACCAAGATTAGAGGCGAGGTATTTTATGTCCATGATCAA
TTCAACAAGTGATCATTTATACAATAAAACTCTGCTGAATTTTGCAAAGT
TAGATTTTAACATATTGCTAGAGCTGCACAAGGAGGAACTCAATGAATTA
ACAAAGTGGTGGAAAGATTTAGACTTCACTACAAAACTACCTTATGCAAG
AGACAGATTAGTGGAGTTATATTTTTGGGATTTAGGGACATACTTCGAGC
CTCAATATGCATTTGGGAGAAAGATAATGACCCAATTAAATTACATATTA
TCCATCATAGATGATACTTATGATGCGTATGGTACACTTGAAGAACTCAG
CCTCTTTACTGAAGCAGTTCAAAGATGGAATATTGAGGCCG
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