DR908765

Overview
NameDR908765
Unique NameDR908765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.434e-49
Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1
Query:    7 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANA 570
            LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A
Sbjct:  223 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA 415          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.434e-49
Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1
Query:    7 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANA 570
            LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A
Sbjct:  223 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA 415          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.434e-49
Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1
Query:    7 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANA 570
            LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A
Sbjct:  223 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA 415          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.434e-49
Identity = 93/192 (48.44%), Postives = 125/192 (65.10%), Query Frame = 1
Query:    7 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAEN 576
            L+DL+   N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SGHKYGLVY GVGW++WR K+ LP+ELVF ++YLG   PT  +NFS+ +SQII QYY F+R G+EGY+ I       A  L + + +TG FEI +    +P+V + LKD +  A T++++++ L+  GW VPAY +P    N
Sbjct:  220 LNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQMKGWQVPAYPLPKEMGN 411          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.434e-49
Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1
Query:    7 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANA 570
            LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A
Sbjct:  223 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA 415          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.434e-49
Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1
Query:    7 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANA 570
            LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A
Sbjct:  223 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA 415          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.173e-49
Identity = 94/193 (48.70%), Postives = 128/193 (66.32%), Query Frame = 1
Query:    7 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANA 570
            LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LK+     +T++++SE LR  GW VPA+T+   A
Sbjct:  223 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA 415          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.342e-47
Identity = 90/190 (47.37%), Postives = 123/190 (64.74%), Query Frame = 1
Query:    4 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPAN 567
            LL + +   NE       IH+D ASG    PF+ P+L WDFRL  V SIN SGHKYGLVY GVGW++W+ K+ LP EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + LKD      T++++++ L   GW VPAY +PA+
Sbjct:  224 LLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPAD 413          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.906e-47
Identity = 91/190 (47.89%), Postives = 128/190 (67.37%), Query Frame = 1
Query:    1 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMP 561
            K + + L K  +ETG D PIHVDAASGGF+APFL P++ WDFRLP VKSIN SGHK+GL   GVGWVVWR K+D+  +LVF +NYLG + PTF+LNFS+   QI+ QYY F+R G  GY  + + C+ +   + + ++K G F+I+    G +P   + LK  +     +F++S+ +R  GW + +YT+P
Sbjct:  219 KGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLP 408          
BLAST of DR908765 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.906e-47
Identity = 88/191 (46.07%), Postives = 124/191 (64.92%), Query Frame = 1
Query:    1 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPAN 567
            +LL + +   NE       IH+D ASG    PF+ P+L WDFRL  V SIN SGHKYGLVY GVGW++W+ K+ LP EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + +K+      T++++++ L   GW VPAY +PA+
Sbjct:  223 QLLDEKVEAYNETNEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPAD 413          
The following BLAST results are available for this feature:
BLAST of DR908765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCEB_ECOL61.434e-4949.22Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO571.434e-4949.22Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL1.434e-4949.22Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_LISMO1.434e-4948.44Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEA_ECOLI1.434e-4949.22Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL61.434e-4949.22Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO574.173e-4948.70Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEC_LISIN1.342e-4747.37Probable glutamate decarboxylase gamma OS=Listeria... [more]
GADA_DICDI3.906e-4747.89Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCEC_LISMO3.906e-4746.07Probable glutamate decarboxylase gamma OS=Listeria... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16893 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908765 ID=DR908765; Name=DR908765; organism=Citrus sinensis; type=EST; length=583bp
AAGCTTCTTCATGACCTCCTCACCAAAAAGAATGAGGAGACCGGTTGGGA
CACCCCCATTCATGTTGATGCTGCTAGCGGCGGATTTATTGCTCCTTTTC
TCTATCCAGACCTTGAATGGGATTTCCGTTTGCCACTGGTGAAGAGCATT
AATGTCAGTGGTCACAAGTACGGCCTTGTATATGCAGGTGTTGGCTGGGT
TGTCTGGAGGACCAAAGATGACTTGCCGGATGAACTTGTCTTTCACATCA
ACTACCTTGGATCTGATCAACCGACTTTCACCCTCAACTTCTCAAAAGGC
TCCAGTCAAATAATTGCTCAATATTATCAGTTTATACGGCTTGGCTTTGA
GGGTTACAAGAACATTATGGAAAATTGCATGGGGAATGCTAGAGCGCTAA
GAGAAGGATTAGAGAAAACAGGGCGCTTTGAAATTCTCTCCAAGGATGTT
GGCGTACCCTTAGTAGCCTTTTCTTTGAAGGACAGCAGCGCACACACCGT
GTTTGAGATATCCGAGGGTTTGAGAAAGTTTGGGTGGATAGTTCCGGCCT
ATACAATGCCTGCTAATGCTGAAAATGGGGGCG
back to top