DR908760

Overview
NameDR908760
Unique NameDR908760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  226 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKK 576
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQ 118          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 40/111 (36.04%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  235 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRD 567
            +H  LGAG  AD+ LWRN+  +  +L  +T  W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N+  P +P + +PE+F  + A  LR  IN  L++  +I   R+
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARN 123          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.147e-14
Identity = 36/127 (28.35%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  199 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKF 579
            S  +RL GR+  +H  +G GK AD+ LWR + +S GV+  +T  W++FE      +++   + ++ + + F+ +  S F N+    +P + L E+ V   A++ R ++N  L +  ++  G D + F
Sbjct:   20 SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLF 146          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  223 REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLK 573
            R + ++H LG G+ ADI  W+NKK S  +LG  T +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E   +F+         +IN  +  L +I+SG+D +
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFR 132          
The following BLAST results are available for this feature:
BLAST of DR908760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLJ_ARATH1.108e-1735.90Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH9.383e-1736.04Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH1.147e-1428.35Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH3.337e-1435.25Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16888 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-08_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908760 ID=DR908760; Name=DR908760; organism=Citrus sinensis; type=EST; length=583bp
TCTAGAGTCTAGTACATTTTTCAATTCATTTTCATCGGCGCTTACTCGGC
GGCAGAGATCTATGGCGGAACATGCACCTGAGCACGAATCAGCCGACAAA
TCACCTGGTGGAGAAGATCACGGATAAGATCCATGGCCACGACTCCTCGT
CATCTGACTCCGATGACGACAAGCCGTCGTCTATTGACGCCCTTTAAGTC
CAAAGTATTCAGGCTCTTCGGAAGAGAAAAACCTATTCACCATGTCCTCG
GAGCTGGAAAACCTGCTGATATTTTCCTATGGAGGAACAAGAAAATCTCT
GCTGGTGTGCTAGGTGGAGCCACTGCAATGTGGGTTCTCTTTGAGTTGCT
GGAATACCATTTAATCACTTTGGTCTGCCATATATCGATTCTCTCTCTGG
CTGTTCTCTTCCTGTGGTCCAATGCATCCACATTTATCAACAAATCACCG
CCAGAGATTCCAGTTGTTACACTTCCTGAGAAGTTTGTCCTTGAATTCGC
CTCTGCCTTGAGGTATGAAATCAACCGAGCCTTGGCTGTCCTGCGGGAAA
TTGCGTCTGGAAGGGACTTGAAGAAGTTTCTTG
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