CN189516

Overview
NameCN189516
Unique NameCN189516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1574 contig Csv1_Contig1574:1182..1882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44
Identity = 81/147 (55.10%), Postives = 107/147 (72.79%), Query Frame = -2
Query:  242 ELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 682
            E ++ IE L+P+ +PGR+T I RMGA+ +R KLP L+  V  SG  V W++DPMHGNT +A  G KTR FD +  EV+ FF+VH+  G+HPGG+H+E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:  302 EALQYIERLDPEREPGRLTFIVRMGADKIRDKLPELVEKVTASGATVAWITDPMHGNTYEAASGHKTRRFDDVLDEVKGFFEVHKSLGTHPGGIHVELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 448          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_STRLI (Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragment) OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.520e-39
Identity = 76/145 (52.41%), Postives = 102/145 (70.34%), Query Frame = -2
Query:  242 VKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 676
            ++ IE L+P+ +PGR+T I RMGA+ +R KLP L+         V W++DPMHGNT +A    KTR FD +  EV+ FF+VH+  G+HPGG+H+E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:    1 LQYIERLDPEREPGRLTFIVRMGADKIRDKLPELVERSPPPAT-VAWITDPMHGNTYEAAPVHKTRRFDDVLDEVKGFFEVHKSLGTHPGGIHVELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 144          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.869e-34
Identity = 70/153 (45.75%), Postives = 101/153 (66.01%), Query Frame = -2
Query:  233 NELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRS--GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 685
            ++L+ ++  LNP  +PG++T+ITR GA+ +   LP  IR V  S   + V W  DPMHGNT     G+KTR F  I +E++    +H++E S+ GG+HLE+TG  VTEC+GG   +  DDLS+ Y + CDPRLN  Q+LELAF++A+  R+ R
Sbjct:  316 SDLLPMLRTLNPNREPGKVTLITRYGADKVASLLPAHIRTVESSEYARTVVWQCDPMHGNTQSVSGGIKTRKFSDIFSELQQTLRIHKEEKSYLGGMHLELTGDAVTECLGGGAGLDEDDLSTNYTSFCDPRLNEKQALELAFLVADHYRQER 468          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: PHZC_PSEFL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas fluorescens GN=phzC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = -2
Query:  275 NELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSL 685
            ++L+ L E L+P+ +PGR+T+I RMGA  +  +LP L+ AVRR+G  + W+SDPMHGNTI APCG KTR   +I  E+ AF       G   GG+HLE T  +V+EC   S       + S Y + CDPRLN  Q++
Sbjct:  249 DQLLSLCERLDPRREPGRLTLIARMGAHKVADRLPPLVEAVRRAGHKIIWLSDPMHGNTIVAPCGNKTRMVQTITDEITAFKHAVVSAGGVAGGLHLETTPDDVSEC--ASDAAGLGQVGSHYKSLCDPRLNPWQAI 383          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: PHZC_PSECL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas chlororaphis GN=phzC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = -2
Query:  275 NELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSL 685
            ++L+ L E L+ + +PGR+T+I RMGA+ +  +LP L+ AVR++G  + W+SDPMHGNTI APCG KTR   +I  E+ AF       G    G+HLE T  +V+EC   S       ++SRY + CDPRLN  Q++
Sbjct:  249 DQLLSLCERLDAKREPGRLTLIARMGAQKVAERLPPLVEAVRQAGHKIIWLSDPMHGNTIVAPCGNKTRMVQAITEEIAAFKHAVTSAGGVAAGLHLETTPDDVSEC--ASDAAGLHQVASRYKSLCDPRLNPWQAI 383          
The following BLAST results are available for this feature:
BLAST of CN189516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AROF_STRCO1.525e-4455.10Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_STRLI2.520e-3952.41Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragm... [more]
AROF_NEUCR1.869e-3445.75Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]
PHZC_PSEFL4.458e-2845.99Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
PHZC_PSECL2.890e-2744.53Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P20_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189516 ID=CN189516; Name=CN189516; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTCGATGTATCTAAATCCCATATTTTTTTATTCCTTCGTTCCTTAC
GTCTCAAGCCATCATGTCCTTTTAATATACACATTCAGTACATGACATAA
ATTAAATCAAAAAACCAAAATTAAAAATACTAGCACAGCTGCTAAACTTG
AAGAAAAATAATAATATATGCCAGCAGTACTCGGGCCATTCTACAGGAGA
GAAGAAGAGGCAAGAGGTTGCTGTGAGCTAATCCTCCTCTTTCTGAGGCG
CTCGGCAATGATGAAGGCAAGCTCAAGTGACTGTGAAGCATTGAGCCTAG
GGTCACAGTGGGTGTGGTAGCGTGAACTCAAGTCGTCGAATGTCACTGTT
CTTGACCCACCGATGCACTCTGTCACATTCTGGCCTGTCATCTCCAAATG
TACTCCTCCCGGGTGACTTCCTTCTTGCTCATGCACATCAAAGAATGCTC
TCACTTCAGCCCTGATAGAATCGAAGGGACGAGTTTTCAGGCCGCAGGGA
GCCTTGATGGTGTTACCATGCATAGGGTCACTGACCCATGTAACAATTTG
GCCAGAGCGGCGGACTGCCCTAATTAGATGAGGAAGCTTCACTCTCATGT
TCTCAGCACCCATTCTAGTGATAATAGTTATCCTCCCCGGTTTATTCTGA
GGATTCAAAATCTCAATAAGCTTCACTAGCTCATTAGGATCCATCTTATC
A
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