CN189515

Overview
NameCN189515
Unique NameCN189515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 53/197 (26.90%), Postives = 86/197 (43.65%), Query Frame = 3
Query:  105 ILMKGHERPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 689
            + + GH   +  L +N  GD L + + DHT +VW   +G R+ T  GH G +     + D   + T S D++ KLW+   G  + T    +     V F + G  +A  + D    + SA   K +A             L+G +G I++  +      I++A  D   R+W+  TG+ L+      GH   I S A
Sbjct:  213 LTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHEDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAK------------LEGHEGEISKICFNAQGNRILTASSDKTSRLWNPHTGECLQVL---KGHTDEIFSCA 394          

HSP 2 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 53/193 (27.46%), Postives = 83/193 (43.01%), Query Frame = 3
Query:  108 LMKGHERPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 683
            +++ H  PLT + +N+ G    + + D T  VW   +GE L T  GH   V+    +      + TGS D+T KLW+ ETG    TF     A  V  A   +  +I T     +++   +  I      QSGE  L L G    I    +      +I+   D  V +W+  +G+ +       GH+  I+S
Sbjct:   87 VLRAHILPLTNVAFNKSGSSFITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFR-GHTAEIVCLAFNPQSTLIATG---SMDTTAKLWDI------QSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTL---IGHRGEISS 266          

HSP 3 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 52/192 (27.08%), Postives = 90/192 (46.88%), Query Frame = 3
Query:  111 MKGHERPLTYLKYNED-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 677
            ++GH   +  +++N   GD + + + D T  +W A+ G+   T+RGH   + C   +  S  + TGS D TAKLW++++G +  T +   +   S+ F   GD+L   + D         H   +   P   SG  +  L G +G I+ A +      I +A  D   ++WD+  GK +      TGH+  +
Sbjct:  130 LEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLAFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFD---------HTVSVWEIP---SGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATL---TGHEDEV 306          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  111 MKGHERPLTYLKYNED-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 638
            ++GH   +  + +N   GD + + + D T  +W A+ G+   T+RGH   + C   +  S  + TGS D TAKLW+VE+G ++ T        +  FA    L   TT   +   S  H   +   P   SG  V +L G +G I+   +      I +A  D   ++WD E G+ L
Sbjct:  130 LEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTL-------AGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVP---SGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCL 296          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 60/202 (29.70%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   99 RPIL----MKGHERP-LTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 686
            RPI+    ++GHE   +T ++ + D  LL + + D+T  VW  D+GE   T  GH+G VW   +S+    +++GS D+T K+W  E G  L T     S  R +  A        TT      +  + V  I      ++G  V  L+G Q  +    +      ++S G D  V+IWD  +GK L+      GH   + SL
Sbjct:  245 RPIMGSAILRGHEEHVITCMQIHND--LLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAMA-------NTTLVTGSRDCTLRVWDI------ETGLHVRTLQGHQAAVRCVQFD--GNIVVSGGYDFTVKIWDAFSGKCLRTL---IGHSNRVYSL 426          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 49/180 (27.22%), Postives = 81/180 (45.00%), Query Frame = 3
Query:  111 MKGHERPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP---ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 641
            + GH + +  +K++ DG LL S + D T  +W A  G R+ T  GH+  V     + +   L T + D + KLW+ ETGA L T    +      + D A G  LA  + D  + L               +SG  +  +      +  A +      ++++  D ++R+WDT+TG  LK
Sbjct:   36 LSGHTKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDV------------RSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLK 203          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 61/233 (26.18%), Postives = 92/233 (39.48%), Query Frame = 3
Query:  111 MKGHERPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMEL----------NSAIHVKRIAGDPADQSGESVL---------------------ILKGPQGRIN-------RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 689
            +KGH   +  L YN DG +LFS + D T  VW ++ GER+   +GH   V  C  +R    L+ TGS D T KLW++   A + TF       +V F    D++     D  +++              H   + G      G  +L                      +K  QG ++       R  W P    I +   D  V +WDT + ++L    K  GH  +I  +A
Sbjct:  105 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILY---KLPGHAGSINEVA 334          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: SCON2_NEUCR (Sulfur controller 2 OS=Neurospora crassa GN=scon-2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 50/193 (25.91%), Postives = 88/193 (45.60%), Query Frame = 3
Query:  108 LMKGHERPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 686
            ++KGHE  +T L+   D ++L + + D T  +W  +  E + T  GH   +       D   LI+GS D T K+WN  TG  L TF   + +       G  LA  ++D  +++              D + +    LKG    +N       +RT+ SA +D  +++WD +T ++++  +   GH + +  L
Sbjct:  289 VLKGHENGVTCLQL--DDNILATGSYDTTIKIWNIETEECIRTLVGHTAGIRALQF--DDSKLISGSLDHTIKVWNWHTGECLSTFAAHTDSVISVHFDGHLLASGSSDKTVKI-------------FDFNSKETYCLKGHSDWVNSTHVDIKSRTVFSASDDTTIKLWDLDTRQVIRTYEGHVGHVQQVLIL 464          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 61/233 (26.18%), Postives = 92/233 (39.48%), Query Frame = 3
Query:  111 MKGHERPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMEL----------NSAIHVKRIAGDPADQSGESVL---------------------ILKGPQGRIN-------RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 689
            +KGH   +  L YN DG +LFS + D T  VW ++ GER+   +GH   V  C  +R    L+ TGS D T KLW++   A + TF       +V F    D++     D  +++              H   + G      G  +L                      +K  QG ++       R  W P    I +   D  V +WDT + ++L    K  GH  +I  +A
Sbjct:  106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLY---KLPGHAGSINEVA 335          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 62/233 (26.61%), Postives = 92/233 (39.48%), Query Frame = 3
Query:  111 MKGHERPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMEL-----NSAIHVKRIAGDPA---DQSGESVLILKGP-----------------------QGRIN-------RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 689
            +KGH   +  L YN DG +LFS + D T  VW ++ GER+   +GH   V  C  +R    L+ TGS D T KLW++   A + TF       +V F    D++     D  +++     N   +  R   D       S E   +L                          QG ++       R  W P    I +   D  V +WDT + ++L    K  GH  +I  +A
Sbjct:  106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILY---KLPGHAGSINEVA 335          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: FBXW7_MOUSE (F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 57/205 (27.80%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  102 PILMKGHE-RPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPAD--------QSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 686
            P ++KGH+   +T L++   G+ + S + D+T  VW A  G+ L T  GH G VW   + RD++ +I+GS D+T K+WN ETG  + T +   S  R +                      +H KR+     D        ++G+ + +L G    +    +    R ++S   D +V++WD ET   L       GH   + SL
Sbjct:  295 PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-RDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH---------------------LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSL 469          
BLAST of CN189515 vs. ExPASy Swiss-Prot
Match: FBXW7_HUMAN (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 57/205 (27.80%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  102 PILMKGHE-RPLTYLKYNEDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPAD--------QSGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 686
            P ++KGH+   +T L++   G+ + S + D+T  VW A  G+ L T  GH G VW   + RD++ +I+GS D+T K+WN ETG  + T +   S  R +                      +H KR+     D        ++G+ + +L G    +    +    R ++S   D +V++WD ET   L       GH   + SL
Sbjct:  373 PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-RDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH---------------------LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSL 547          
The following BLAST results are available for this feature:
BLAST of CN189515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
WDR69_XENTR1.943e-1226.90WD repeat-containing protein 69 OS=Xenopus tropica... [more]
WDR69_DANRE5.654e-1229.38WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
SEL10_CAEBR5.654e-1229.70F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
MUT11_CHLRE1.260e-1127.22Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
SNR40_HUMAN1.645e-1126.18U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
SCON2_NEUCR2.149e-1125.91Sulfur controller 2 OS=Neurospora crassa GN=scon-2... [more]
SNR40_MOUSE2.806e-1126.18U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
SNR40_BOVIN2.806e-1126.61U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
FBXW7_MOUSE6.252e-1127.80F-box/WD repeat-containing protein 7 OS=Mus muscul... [more]
FBXW7_HUMAN6.252e-1127.80F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189515 ID=CN189515; Name=CN189515; organism=Citrus sinensis; type=EST; length=689bp
AGGCTTTGCGGTCTCAAGGCTTTCCAACGCTCCACCGGAAACTCCATTCG
TCGCGGAATTCAGCAAAACAGAGAAAGAAGAAGAAAAAAGCAAGCATGAG
ACCAATTTTGATGAAAGGCCATGAGAGGCCTTTAACATATCTTAAATACA
ACGAAGACGGAGATCTGCTCTTTTCATGTGCCAAGGATCACACACCCACC
GTTTGGTTCGCTGACAATGGCGAGCGTCTTGGCACCTACCGCGGCCACAA
CGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGATTCGATGACGCTAATAA
CCGGGAGTGCTGACCAGACGGCGAAGCTATGGAATGTTGAAACAGGGGCT
CAGTTGTTCACATTCAATTTTGATTCTCCTGCTAGGTCTGTCGACTTTGC
TGTTGGTGATAAGCTTGCTGTGATTACTACTGATCCTTTCATGGAATTAA
ACTCAGCCATTCATGTCAAACGCATTGCAGGAGATCCTGCTGATCAGAGT
GGTGAATCTGTGCTTATTCTAAAAGGCCCTCAGGGAAGAATAAACAGAGC
AGTTTGGGGACCTCTAAACAGGACTATCATTAGTGCTGGAGAAGATGCTA
TAGTTCGTATTTGGGATACTGAGACAGGGAAACTGCTTAAAGAGTCGGAC
AAGGAAACTGGTCATAAAAAGACTATAACATCGCTTGCA
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