CN189498

Overview
NameCN189498
Unique NameCN189498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189498 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = -2
Query:  176 SKKITLKSSDGEAFEVDEAVALESQTIKHMI---------------------------------EDDCADNGI--PLPNVTSKILSKVIEYCKKHVEASKSD-DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWA 634
            +  + L S +GE F VD+ +A  S  +K+ +                                 +DD  D+ I  P+PNV S +L KVIE+ + H +++  D D   S     + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP        EN+WA
Sbjct:    3 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of CN189498 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = -2
Query:  299 IKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLT 556
            IK M EDDCADNGIPLPNVTSKIL  VIEYCKKHV  SK         ++DLK WD +F+ K++Q+ LFD+++AANYLNI+SLLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVVESK---------EEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CN189498 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 46/141 (32.62%), Postives = 80/141 (56.74%), Query Frame = -2
Query:  218 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADN---GIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 625
            I L+++DG   +V++ VA+    I + +I+     +    I LP  V   +LS + +YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D T
Sbjct:   18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFHQVPGRSNK--------ERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150          
BLAST of CN189498 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 44/141 (31.21%), Postives = 80/141 (56.74%), Query Frame = -2
Query:  218 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCA---DNGIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 625
            I L+++DG   +V++ VA+    I + +I+       ++ I LP  V   + S +++YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +D T
Sbjct:   18 IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCRFHQLPGRSNK--------ERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLT 150          
The following BLAST results are available for this feature:
BLAST of CN189498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_YEAST1.813e-2738.62Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK6_ARATH1.216e-2365.52SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH4.794e-1232.62SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH4.059e-1131.21SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189498 ID=CN189498; Name=CN189498; organism=Citrus sinensis; type=EST; length=731bp
AGTCTTCACAATTAATGATACAGAGAAGGTTGGGCTGATATGACATTAAA
ACAATAATGGTTTGATGCTTTTACCAGCTAAAGACATTTGAGTCAACACC
AACAACAAAAAGAAGGCAAAACAAAAAAGAAAAGACACAATTACAAATTG
GTCATTTGAGATCCTTTCACTCAAAAGCCCACTGATTCTCCCGACGAACC
TCTTCCTCCTCTTCTGGGGTAAAGTCGTTCTTGATGTTGAATGTCTTGCG
GATCTCCTCTGGAGTCTTTCCCTTAATCATGTCTGCAACAGTCTGGCAAG
TTAAGTCCAGCAAGCTCTTGATGTTCAGGTAGTTTGCCGCAAGAATAAGA
TCAAAGAGAGTGGCCTGATCGACTTTGACGAAATCGGTATCCCAAGCCTT
GAGATCATCATCGACGCCGCTAGTGGCCCGATCGTCGGACTTAGATGCCT
CGACGTGCTTCTTGCAGTACTCGATGACCTTAGAGAGGATCTTACTGGTA
ACGTTAGGCAAAGGGATTCCGTTGTCGGCGCAATCGTCCTCAATCATATG
CTTGATCGTCTGCGATTCCAACGCCACTGCTTCATCGACCTCGAACGCCT
CTCCATCCGAGCTCTTCAGCGTGATTTTCTTACTCGTTGACATTCTGATC
GATCGATCCAACACACTCTTGAAACCCTAACTTTCTTGATATTTATTATA
TTTATAAATAAAAAAACTATGAATATTCATT
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