CN189496

Overview
NameCN189496
Unique NameCN189496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = -3
Query:  463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657
            ++S+P + I          C VC   FE     REMPCKH++H  CILPWL   NSCP+CR ELP
Sbjct:   60 VQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELP 124          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I S+P++ +    V     C VCKE + +  E R++PC H +H  CI+PWL++ ++CPVCR+ L
Sbjct:  209 ITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I S+P++ +    V++   C VCKE + +  + R++PC H +H  CI+PWL++ ++CPVCR+ L
Sbjct:  210 ITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = -3
Query:  463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657
            +ES+P   I S    +E  C VC   FE      EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   71 VESLPRTVIRSS--KAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = -3
Query:  463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657
            +ES+P   I S    ++  C VC   FE      EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   71 VESLPRTVISSA--KADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = -3
Query:  463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657
            +E++P   I      +E  C VC   FE    A EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   59 VENLPRTVIRGSQ--AELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 121          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = -3
Query:  463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657
            +E++P   I      +E  C VC   FE    A EMPC H++H  CILPWL   NSCP+CR ELP
Sbjct:   59 VENLPRTVIRGSQ--AELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELP 121          
The following BLAST results are available for this feature:
BLAST of CN189496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RN181_DANRE1.041e-1247.69E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN115_HUMAN1.360e-1240.63RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN115_MOUSE1.776e-1239.06RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
RN181_RAT6.748e-1249.23E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_MOUSE8.813e-1247.69E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_BOVIN1.503e-1147.69E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_HUMAN2.564e-1147.69E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189496 ID=CN189496; Name=CN189496; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTCAGAGAACCATCAAACTGATTAAACTGAAAAAT
CACTTGTTTATGTATATACAAAAATCAAATAATATATAATTAAAAATATG
TGACTCCTAAGATTAAAAATCATCCCCGAATTAAATTTTCAAACAATACT
TGGACGATCAGACTGTTGAACGTGATGAGTTTGATAATGAGAAGAACGTG
AACTGTTACCCCTAAACCTCCTGAAAATGGATCCAAATCCACGAAAAACC
CTAAAAAATCCGCCAACCCTTCTTTGAGGAAAAACCCTGCTACTGCTAGT
TTGATTATCCATATTATCAGCAAACTCAATTGATAATCCTCTCTCTGCGG
CTCCGGCCACCACTCTCCGGCCCTCATATCTTCCCACTGCAAACCCACCT
CCCGGCAGCCACCATATAGACAGCGCCATCGACAATTCTTCTGCGGCTGC
GGCTGCGGCTGCTGGTAGCTCTTGCCTGCAAACCGGGCACGAGTTTCGCA
TTTTGAGCCACGGGAGAATACAATCTTCATGGTATATATGCTTGCACGGC
ATCTCTCTCGCCTCGTTTCCAAGCTCAAACGCCTCTTTACATACTGCACA
GTGACACTCTGAACTTACGTGGCCTGACAAAATCTCTATGCTTGGCATCG
ACTCGATCG
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