CN189495

Overview
NameCN189495
Unique NameCN189495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2082 contig Csv1_Contig2082:437..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 33/94 (35.11%), Postives = 44/94 (46.81%), Query Frame = 1
Query:   73 GFHLLLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 354
            G   L +++   DL  +    +LP   A                ++  C VC   FE      EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   40 GGRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  208 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 351
            +  C+VCKE  E G + R +PCKH +HE+CIL WLK  NSCP+CR EL
Sbjct:   67 DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYEL 114          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 34/94 (36.17%), Postives = 44/94 (46.81%), Query Frame = 1
Query:   73 GFHLLLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 354
            G   L +++   DL  +    +LP   A                +E  C VC   FE      EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   40 GSRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  205 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 354
            +E  C VC   FE    A EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   72 AELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 121          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  205 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 354
            +E  C VC   FE    A EMPC H++H  CILPWL   NSCP+CR ELP
Sbjct:   72 AELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELP 121          
The following BLAST results are available for this feature:
BLAST of CN189495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RN181_MOUSE2.435e-1135.11E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_DROME3.180e-1158.33E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
RN181_RAT4.153e-1136.17E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_BOVIN4.153e-1156.00E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_HUMAN7.084e-1156.00E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001P08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189495 ID=CN189495; Name=CN189495; organism=Citrus sinensis; type=EST; length=738bp
GAGGACGGTCAGGGGTCAGAGTCAACTCTAAGGCCGATACCAGAAAGAGT
TTTAGGGTTCTTGATGGATTCAGGATTTCATCTGTTACTTCATCAACTGT
CTCAGATTGATCTAACGGCGCTATCCCGGCCGGAGAATCTGCCGGCATCA
AAAGCTTCGATCGAGTCGATGCCAAGCATAGAGATTTCGTCAGGCCACGT
AAGTTCAGAGTGTCACTGTGCAGTATGTAAAGAGGCGTTTGAGCTTGGAA
ACGAGGCGAGAGAGATGCCGTGCAAGCATATATACCATGAAGATTGTATT
CTCCCGTGGCTCAAAATGCGAAACTCGTGCCCGGTTTGCAGGCAAGAGCT
ACCAGCAGCCGCAGCCGCAGCCGCAGAAGAATCGTCGATGGCGCTGTCTA
TATGGTGGCTGCCGGGAGGTGGGTTTGCAGTGGGAAGATATGAGGGCCGG
AGAGTGGTGGCCGGAGCCGCAGAGAGAGGATTATCAATTGAGTTTGCTGA
TAATATGGATAATCAAACTAGCAGTAGCAGGGTTTTTCCTCAAAGAAGGG
TTGGCGGATTTTTTAGGGTTTTTCGTGGATTTGGATCCATTTTCAGGAGG
TTTAGGGGTAACAGTTCACGTTCTTCTCATTATCAAACTCATCACGTTCA
ACAGTCTGATCGTCCAAGTATTGTTTGAAAATTTAATTCGGGGATGATTT
TTAATCTTAGGAGTCACATATTTTTAATTATATATTAT
back to top