CN189487

Overview
NameCN189487
Unique NameCN189487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            FV D  S   DAKAGI LS  FVKLV+WYDNEWGYS RVVDL +H+AK
Sbjct:  288 FVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = -1
Query:  325 DSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 459
            D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV+++K
Sbjct:  287 DPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  328 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 465
            +G++ SSIFDAKAGI+L+  FVKLV+WYDNEW YS RV+DLI ++A
Sbjct:  287 IGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F+G + SSIFDA+AGIAL+  FVKLVSWYDNE+GYS RV DLI ++A
Sbjct:  286 FIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = -1
Query:  328 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 462
            GD+ S IFDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI ++A
Sbjct:  287 GDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 468
            FVGD+ SSIFDA AGI+L+  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  286 FVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  286 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+ D+ S +FDAKAGI LS  FVKL++WYDNEWGYS RV +L+ ++AK
Sbjct:  284 FISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+G+S RVVD++  ++K
Sbjct:  284 FLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVSK 331          
The following BLAST results are available for this feature:
BLAST of CN189487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3PC_CHLRE1.435e-1270.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_TRIKO1.435e-1273.33Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_ERYGR1.875e-1267.39Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_CRYNE1.875e-1270.21Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_COCIM1.875e-1268.89Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PT_DANRE1.875e-1269.57Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P_HUMAN2.448e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_FELCA2.448e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P2_AGABI2.448e-1262.50Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_CANGA2.448e-1266.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189487 ID=CN189487; Name=CN189487; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTACANCTGAAGAACAGGTCTTCGATACTAACTAGAT
GAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACA
AAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCT
AAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAAC
AATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTT
AGCGCAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAA
GCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTGGACAATCAAATCCA
CCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTC
ACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGA
CCTACTGTCACCAACAAA
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