CN189487

Overview
NameCN189487
Unique NameCN189487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:52..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            FVGD  SSIFDA A I+L+  FVKL++WYDNE+GYS RVVDLI + A
Sbjct:  291 FVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLISYNA 337          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+G   SSIFDA AGIAL+ +F KLV+WYDNE GY+TR+VDL+ ++ K
Sbjct:  285 FIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F+ DSRSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  301 FISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            FV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  292 FVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F GD+ SSIFD+ A I+L+  FVKL++WYDNE+GYS RVVDLI ++A
Sbjct:  291 FTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F+ D+RSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+  + SS FDA+AGIAL+  FVKL++WYDNE+GYS RVVDLI +M K
Sbjct:  286 FLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDLISYMFK 333          
The following BLAST results are available for this feature:
BLAST of CN189487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P_ONCVO3.536e-1168.09Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_CHLPN3.536e-1162.50Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PG_TRYBB3.536e-1160.78Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P1_CAEEL3.536e-1170.21Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_BRUMA6.031e-1163.83Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PG_TRYCR6.031e-1158.82Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_ECHMU7.876e-1164.58Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189487 ID=CN189487; Name=CN189487; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTACANCTGAAGAACAGGTCTTCGATACTAACTAGAT
GAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACA
AAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCT
AAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAAC
AATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTT
AGCGCAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAA
GCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTGGACAATCAAATCCA
CCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTC
ACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGA
CCTACTGTCACCAACAAA
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