CN189487

Overview
NameCN189487
Unique NameCN189487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:52..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.884e-15
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD RSSIFDA AGI L+  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  285 FLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.884e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+ DSRSS+FDAKAGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  285 FLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  325 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 462
            GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI +++K
Sbjct:  287 GDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD+ SSIFDAKAGI L+  FVKL+SWYDNE+GYS RVVDLIV +AK
Sbjct:  286 FIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  325 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 462
            GD RSSIFDA AGIAL+ +FVKL+SWYDNEWGYS RV+DLI ++AK
Sbjct:  288 GDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD+ SSIFDA AGI L+K FVKL++WYDNEWGYS RVVDL+V  AK
Sbjct:  285 FIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            FVGD++SSIFDA AGIAL+ KFVKLVSWYDNE+GYS RV+DL+ + AK
Sbjct:  285 FVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            FVG + SSIFDAKAGI+L+  FVKLVSWYDNE+GYS RVVDLI HM K
Sbjct:  287 FVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD+ SSIFDA AGIAL+  FVKLVSWYDNE GYSTRV+DL+V+++K
Sbjct:  286 FIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYISK 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  325 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 465
            +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  286 IGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
The following BLAST results are available for this feature:
BLAST of CN189487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P_PICPA6.884e-1575.00Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PICAN6.884e-1577.08Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ASPNG1.174e-1478.26Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_YARLI1.534e-1475.00Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PARBA1.534e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_LENED1.534e-1472.92Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P2_RHIRA1.534e-1475.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_SCHMA2.003e-1477.08Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_DICDI2.003e-1472.92Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_COLLN2.003e-1472.34Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189487 ID=CN189487; Name=CN189487; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTACANCTGAAGAACAGGTCTTCGATACTAACTAGAT
GAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACA
AAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCT
AAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAAC
AATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTT
AGCGCAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAA
GCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTGGACAATCAAATCCA
CCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTC
ACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGA
CCTACTGTCACCAACAAA
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