CN189487

Overview
NameCN189487
Unique NameCN189487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:52..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  325 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 462
            G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DLI H+AK
Sbjct:  287 GNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = -1
Query:  325 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 462
            G++ SSIFDAKAGI+L+K FVKL++WYDNEWGYS RV+DL+ ++AK
Sbjct:  287 GNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -1
Query:  322 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 468
            F+GD+ SSI DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK+
Sbjct:  284 FLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.696e-13
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  325 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 465
            +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  286 LGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.696e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  325 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 462
            G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI +++K
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.696e-13
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  285 FLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
The following BLAST results are available for this feature:
BLAST of CN189487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P_CRYPA7.611e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P2_SCHPO7.611e-1474.47Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_KLULA7.611e-1475.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_CLAPU9.941e-1469.57Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_ZYGRO1.298e-1371.43Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P3_KLUMA1.298e-1375.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA1.298e-1375.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_TRIAT1.696e-1370.21Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_NEUCR1.696e-1373.91Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_DEBHA1.696e-1372.92Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189487 ID=CN189487; Name=CN189487; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTACANCTGAAGAACAGGTCTTCGATACTAACTAGAT
GAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACA
AAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCT
AAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAAC
AATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTT
AGCGCAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAA
GCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTGGACAATCAAATCCA
CCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTC
ACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGA
CCTACTGTCACCAACAAA
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