CN189487

Overview
NameCN189487
Unique NameCN189487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:52..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.215e-13
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 468
            F GDS SSIFDAKAGIAL+  FVKLVSWYDNE+GYS RVVDL+ +M
Sbjct:  382 FNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 427          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.215e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 468
            F+GD+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  358 FLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 403          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  325 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 462
            G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ ++AK
Sbjct:  287 GNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            F+G + SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV DLI ++AK
Sbjct:  285 FLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F+GD+ S+IFDA AGI LS KFVK+V+WYDNE+GYS RVVDL+ H+A
Sbjct:  283 FLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.777e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F GD RSSIFDA AGIAL+  FVKLV+WYDNE+GYS RV DL+ HMA  +
Sbjct:  284 FNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.777e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F+G S SSIFD KAGI LS  FVKL+SWYDNE+GYST+VVDL+ H+A
Sbjct:  285 FLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.777e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 468
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.777e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 468
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.933e-13
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 468
            F+ D+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  345 FLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLVRYM 390          
The following BLAST results are available for this feature:
BLAST of CN189487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3PT_RAT2.215e-1378.26Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_HUMAN2.215e-1373.91Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_PODAN2.892e-1371.74Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_CRYCU2.892e-1368.75Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_KLULA2.892e-1370.21Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_DANRE3.777e-1370.00Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_CANAL3.777e-1372.34Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P2_DROPS3.777e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME3.777e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3PT_BOVIN4.933e-1371.74Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189487 ID=CN189487; Name=CN189487; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTACANCTGAAGAACAGGTCTTCGATACTAACTAGAT
GAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACA
AAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCT
AAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAAC
AATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTT
AGCGCAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAA
GCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTGGACAATCAAATCCA
CCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTC
ACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGA
CCTACTGTCACCAACAAA
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