CN189487

Overview
NameCN189487
Unique NameCN189487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:52..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.933e-13
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F+ +  S +FDA AGI L+ +F KLV+WYDNEWGYS RVVDLI H+AK Q
Sbjct:  286 FIHEEASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDLIAHVAKLQ 335          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 33/47 (70.21%), Postives = 43/47 (91.49%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ ++A
Sbjct:  285 FLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 468
            F  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            FVG + S IFDAKAGIAL+ +F+KLV+WYDNEWGY+ RV D +V++AK
Sbjct:  288 FVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCDEVVYVAK 335          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  273 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  319 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 468
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 468
            FVG+  SS+FDA AGI L+  FVKL++WYDNE+GYS RVVDL+VH AK
Sbjct:  285 FVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAK 332          
BLAST of CN189487 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  328 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 468
            F GDS SS FDA+ GI+L+  FVKLVSWYDNEWGYS RV DL+ ++A
Sbjct:  286 FTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
The following BLAST results are available for this feature:
BLAST of CN189487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3PC_GRAVE4.933e-1364.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PICCI6.443e-1370.21Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_DROME6.443e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P1_AGABI6.443e-1366.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_SPECI8.415e-1368.00Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_SHEEP8.415e-1368.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_PIG8.415e-1368.00Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_BOVIN8.415e-1368.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P1_RHIRA8.415e-1368.75Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_PHARH1.435e-1268.09Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189487 ID=CN189487; Name=CN189487; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTACANCTGAAGAACAGGTCTTCGATACTAACTAGAT
GAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACA
AAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCT
AAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAAC
AATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTT
AGCGCAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAA
GCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTGGACAATCAAATCCA
CCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTC
ACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGA
CCTACTGTCACCAACAAA
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