CN189479

Overview
NameCN189479
Unique NameCN189479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:517..1158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVG_ECOLI (Acetolactate synthase isozyme 2 large subunit OS=Escherichia coli (strain K12) GN=ilvG PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 3.768e-28
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = -3
Query:  212 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 631
            GA VA P+  +V I GDGSF+MNVQEL T+K ++LP+KI+LL+NQ LGMV QW+  F++   + T L D        P+ L  A A GI G  +TRK  + AA+ TML++ GPYLL V +   E+V P++P G +  +++
Sbjct:  412 GAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTDN-------PDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEML 544          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.067e-26
Identity = 59/140 (42.14%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  212 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 631
            GA+VA P  I++DIDGD SF M   ELAT++   +P+KIL+LNN+  GMV QW++ FY+   +HT+  +        PN +K A+A GI   +V ++ DL   ++  L T GP L++V+V  +EHV P +P G A    I
Sbjct:  532 GASVAAPKDIVIDIDGDASFSMTGMELATVRQFDIPVKILILNNEEQGMVTQWQNLFYEKRYSHTHQKN--------PNFVKLADAMGIKALRVEKREDLAKKMKEFLSTKGPVLMEVLVAQKEHVYPFVPGGKALHQFI 663          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_CYACA (Acetolactate synthase large subunit OS=Cyanidium caldarium GN=ilvB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = -3
Query:  233 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 631
            GA +ANP+ +I+ I GD SF MN+QEL TI   +L IKI ++NNQ  GMV QW+  FY    AH+ +          P+ ++ A + GI G +VT   DL++ I+ ++ TPGP L+D IV   E+  PMI  G
Sbjct:  441 GAKIANPNDLIICITGDASFQMNLQELGTIAQYELDIKIFIINNQWQGMVRQWQQAFYDQRYAHSNMAKGQ------PDFVQLANSYGIRGIRVTTSKDLKSKIERIISTPGPLLIDCIVATSENCYPMIAPG 567          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.649e-23
Identity = 54/140 (38.57%), Postives = 85/140 (60.71%), Query Frame = -3
Query:  212 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 631
            GA VA P+++++DIDGD SF M + EL++      P+KIL+LNN+  GMV QW+  FY+   +HT+        ++ P+ +K AEA G+ G +V ++ +L A ++  + T GP LL+V V  +  VLPM+  G    + I
Sbjct:  534 GAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFI 665          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_PORYE (Acetolactate synthase large subunit OS=Porphyra yezoensis GN=ilvB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.766e-23
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  233 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 631
            GA VA+P+ +++ I GD SF MN+QEL TI   +LP+KI+++NN+  GMV QW+  FY    +H      SR +E  P+  K AEA GI    +  + ++++A+Q  +D PGP LLD  V   E+  PM+  G
Sbjct:  439 GAQVAHPNDVVICISGDSSFQMNMQELGTIAQYQLPVKIIIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPDFQKLAEAFGIKAFTINNRQNMQSALQVAIDYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_PORUM (Acetolactate synthase large subunit OS=Porphyra umbilicalis GN=ilvB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  233 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 631
            GA VA+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  439 GAQVAHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_PORPU (Acetolactate synthase large subunit OS=Porphyra purpurea GN=ilvB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  233 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 631
            GA VA+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  439 GAQVAHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_METJA (Probable acetolactate synthase large subunit OS=Methanocaldococcus jannaschii GN=ilvB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.777e-20
Identity = 48/140 (34.29%), Postives = 83/140 (59.29%), Query Frame = -3
Query:  212 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 631
            GA VA P A ++ I GDG F+MN QELATI    +P+ I + +N+ LGMV QW++ +Y   ++  +LG+        P+ +K AE+ G+   ++    +++  ++  + +  PYLLD+++   E  LPM+P GG   +++
Sbjct:  431 GAKVAKPYANVISITGDGGFLMNSQELATISEYDIPVVICIFDNRTLGMVYQWQNLYYGQRQSEVHLGES-------PDFVKLAESYGVKADRIISPDEIKEKLKEAILSNEPYLLDIVIDPAE-ALPMVPPGGRLTNIV 562          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_ECOLI (Acetolactate synthase isozyme 1 large subunit OS=Escherichia coli (strain K12) GN=ilvB PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.777e-20
Identity = 53/143 (37.06%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  206 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN-RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITE 631
            GAA+ANPD  ++   GDGS +MN+QE+AT    +L +KI+L+NN+ LG+V Q +  FY+    A TY G          N ++ A   G+    +  +AD +A++Q +++ PGP L+ V +  +E V PM+P G A  +++ E
Sbjct:  428 GAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGK--------INFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE 562          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNV (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=ILV2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.413e-20
Identity = 54/140 (38.57%), Postives = 80/140 (57.14%), Query Frame = -3
Query:  218 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG--PYLLDVIVPHQEHVLPMIPSGGAFKD 631
            GA VA P+  ++DIDGD SF M   ELAT     + +K+LL NN+  GMV QW+D FY+   +HT + +        P+ +K +E+ G  G + T+  DL   ++  L+  G  P +L+ +V   EHV PMIP+G A  +
Sbjct:  576 GAKVAAPEKYVIDIDGDASFSMTAMELATASQYDIGVKVLLFNNEFQGMVEQWQDLFYENRYSHTRMTN--------PDFVKLSESMGAKGLRCTKLEDLPRMMKEFLEYDGKRPIVLECLV-SSEHVYPMIPAGKALHE 706          
The following BLAST results are available for this feature:
BLAST of CN189479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ILVG_ECOLI3.768e-2845.71Acetolactate synthase isozyme 2 large subunit OS=E... [more]
ILVB_SCHPO2.067e-2642.14Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVB_CYACA2.139e-2342.86Acetolactate synthase large subunit OS=Cyanidium c... [more]
ILVB_YEAST3.649e-2338.57Acetolactate synthase catalytic subunit, mitochond... [more]
ILVB_PORYE4.766e-2341.35Acetolactate synthase large subunit OS=Porphyra ye... [more]
ILVB_PORUM3.089e-2241.35Acetolactate synthase large subunit OS=Porphyra um... [more]
ILVB_PORPU3.089e-2241.35Acetolactate synthase large subunit OS=Porphyra pu... [more]
ILVB_METJA3.777e-2034.29Probable acetolactate synthase large subunit OS=Me... [more]
ILVB_ECOLI3.777e-2037.06Acetolactate synthase isozyme 1 large subunit OS=E... [more]
ILVB_CRYNV8.413e-2038.57Acetolactate synthase, mitochondrial OS=Cryptococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189479 ID=CN189479; Name=CN189479; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTACATTGTAACTCATAGAGTTTGTTTGTTAAACA
AACACTAGTTCCATTAAAACTGACACCTGAACTAAAAACACTGCCACACA
CTCATAGGTAAGTTAAGCCTGCAACTCAAAAGGAACATAAATACATAGCC
AAGAAGGCATCTATGCTGCTTCAGCTTGTCGTTAATACTGCGTTCTTCCA
TCACCTTCAGTGATCACATCTTTAAAAGCTCCACCACTGGGGATCATAGG
CAGGACATGCTCTTGATGAGGAACGATGACGTCCAGAAGGTATGGTCCAG
GAGTGTCCAACATAGTCTGAATTGCGGCTCTCAGATCTGCCTTCCTTGTT
ACTTGTGCTCCAGGTATTCCACAGGCTTCTGCAAACTTCAACATATTCGG
AAATATTTCAGACTCTCTTGATGGATCTCCCAAATACGTGTGAGCCCTAT
TTGCCTTGTAAAACCGATCCTCCCATTGCATCACCATGCCCAAGTGCTGA
TTATTCAACAGCAATATCTTGATGGGGAGTTTCTCTACCTTAATAGTCGC
CAACTCCTGGACGTTCATGATGAAACTCCCATCACCATCAATATCTACAA
TGATGGCATCAGGATTTGCAACAGCAGCTCCGTATTGCAGCG
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