CN189479

Overview
NameCN189479
Unique NameCN189479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:517..1158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_METAO (Probable acetolactate synthase large subunit OS=Methanococcus aeolicus GN=ilvB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.908e-17
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = -3
Query:  212 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 631
            GA VA PD+ ++ I GDG F+MN QEL TI    +P+ I + +N+ LGMV QW++ FY   +     G         P+ +K AE+ GI   ++    ++  A++  ++   PYLLD  +      L M+P G    ++I
Sbjct:  439 GAKVAKPDSKVICITGDGGFMMNCQELGTIAEYNIPVVICIFDNRTLGMVYQWQNLFYGKRQCSVNFGGA-------PDFIKLAESYGIKARRIESPNEINEALKEAINCDEPYLLDFAI-DPSSALSMVPPGAKLTNII 570          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVI_BUCSC (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=ilvI PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  194 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGR 631
            G  +A P+  ++ + GDGS  MN+QEL+T    +LPI IL LNN+ LGMV QW+D  Y    +H+Y+       +  PN +K AE+ G  G  +    +L   +Q  L+         +D+ +   EHV PM    G   +++   +G+
Sbjct:  432 GVKLAFPNETVICVTGDGSIQMNIQELSTAMQYELPILILNLNNKSLGMVKQWQDIIYSGRHSHSYM-------KSLPNFIKLAESYGHSGISINTPKELEKKLQLALEKLQNGHLVFVDIKIDASEHVYPMQIRDGGMNNMLLRKNGQ 573          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_MYCAV (Acetolactate synthase OS=Mycobacterium avium GN=ilvB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.666e-17
Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  233 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ-TMLDTPGPYLLDVIVPHQEHVLPMIPSG 631
            GA +  P+A +  IDGDG F M  QELAT  VE +PIK+ L+NN +LGMV QW+  FY+   + T LG P       P+ +K AEA G  G +  R+ D+   I         P ++  IV     V PM+ +G
Sbjct:  467 GAKMGRPEAEVWAIDGDGCFQMTNQELATCAVEGIPIKVALINNGNLGMVRQWQTLFYEERYSQTDLGHPLAP---HPDFVKLAEALGCVGLRCEREEDVVDVINAARAINDRPVVIAFIVGADAQVWPMVAAG 597          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVI_BUCBP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ilvI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17
Identity = 53/138 (38.41%), Postives = 73/138 (52.90%), Query Frame = -3
Query:  230 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ---TMLDTPGPYLLDVIVPHQEHVLPM-IPSGG 631
            G  +A P   ++ I GDGS  MN+QEL+T    KL I IL LNN+ LGMV QW+D  Y    +H+Y+       +  PN +K AE+ G  G  +    DL   ++     LD      +D+ +  +EHV PM I SGG
Sbjct:  432 GVKLALPKETVLCITGDGSIQMNIQELSTAMQYKLSILILNLNNRSLGMVKQWQDIIYSGRHSHSYM-------KSLPNFIKLAESYGHIGISIHNPEDLEKKLKLALLKLDQGNLVFVDITIDPEEHVYPMQIRSGG 562          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVI_ECOLI (Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = -3
Query:  191 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRT 631
            G  +A P+  +V + GDGS  MN+QEL+T    +LP+ ++ LNN++LGMV QW+D  Y    + +Y+       +  P+ ++ AEA G  G Q++   +L + +   L+         +DV V   EHV PM   GG   ++      RT
Sbjct:  432 GVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAI (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = -3
Query:  215 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGP---YLLDVIVPHQEHVLPMIPSGGAFKDV 631
            G  +A P   ++ I GDGS  MN+QEL+T +   L + IL LNN  LGMV QW+D  Y    +H+Y+       +  P+ +K +E+ G  G Q+T   +L   +   L          +DV + + EHV PM   GG   ++
Sbjct:  429 GVKLALPKETVICITGDGSIQMNIQELSTARQYNLAVLILNLNNSSLGMVKQWQDMIYSGRHSHSYM-------DSLPDFVKLSESYGHFGIQITEPIELEEKLMLALSKLSDGHLVFVDVQIDNSEHVYPMQIQGGGMNEM 563          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_LACLA (Acetolactate synthase large subunit OS=Lactococcus lactis subsp. lactis GN=ilvB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = -3
Query:  233 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 631
            GA +A P+  ++   GDG F M  QELA +    + IK++L+NN  LGMV QW++ FY+  R+ +         ++ PN    AEA GI   ++     L   ++ + +   P L++V++   EHVLPMIP+G
Sbjct:  430 GAKLAQPNKNVIVFVGDGGFQMTNQELALLNGYGIAIKVVLINNHSLGMVRQWQESFYEERRSQSVF-------DVEPNFQLLAEAYGIKHVKLDNPKTLADDLKIITEDE-PMLIEVLISKSEHVLPMIPAG 554          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.144e-15
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = -3
Query:  215 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI---QTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDV 631
            G  +A P A ++ + GDGS  MN+QEL+T +   L + IL LNN  LGMV QW+D  Y    +H+Y+       +  P+ +K  E+ G  G +V    +L   +      L       LD+ +   EHV PM   GG   ++
Sbjct:  429 GVKLALPKATVICVTGDGSIQMNIQELSTARQYNLAVLILNLNNSSLGMVKQWQDMIYSGRHSHSYM-------DSLPDFVKLVESYGHIGLKVKTNEELEEKLILALKKLSEGNLVFLDIQIDDSEHVYPMQIQGGGMNEM 563          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: ILVB_SPIPL (Acetolactate synthase (Fragment) OS=Spirulina platensis GN=ilvY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.144e-15
Identity = 48/140 (34.29%), Postives = 69/140 (49.29%), Query Frame = -3
Query:  212 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 631
            G  VA+P   +  I GDGSF MN+QEL TI    + +K+++LNN  LGMV QW+  FY      T L D +      P   + A+  G+    V ++   +  +   L   GP +LDV V   E   PM+  G    D++
Sbjct:  442 GVKVAHPHDTVTCISGDGSFQMNMQELGTIAQYGIGVKVIILNNGWLGMVRQWQHMFYNDRYEATNLEDGT------PEFARLADVYGLEAMNVRQRKIYQRRLPKALSHKGPMILDVRVTRDEDCYPMVAPGHDNSDMM 575          
BLAST of CN189479 vs. ExPASy Swiss-Prot
Match: POXB_ECOLI (Pyruvate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=poxB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.433e-12
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = -3
Query:  248 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLP 631
            GA    P+  +V + GDG F M + +  ++   KLP+KI++ NN  LG V           +A  YL D +   +   N  + AEACGI G +V + +++  A+Q      GP L+DV+V  +E  +P
Sbjct:  417 GAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAM-------EMKAGGYLTDGTELHDT--NFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIP 535          
The following BLAST results are available for this feature:
BLAST of CN189479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ILVB_METAO3.908e-1733.57Probable acetolactate synthase large subunit OS=Me... [more]
ILVI_BUCSC5.104e-1732.89Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_MYCAV6.666e-1739.55Acetolactate synthase OS=Mycobacterium avium GN=il... [more]
ILVI_BUCBP8.706e-1738.41Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_ECOLI1.940e-1632.67Acetolactate synthase isozyme 3 large subunit OS=E... [more]
ILVI_BUCAI2.533e-1633.80Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_LACLA2.533e-1635.34Acetolactate synthase large subunit OS=Lactococcus... [more]
ILVI_BUCAP2.144e-1533.10Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_SPIPL2.144e-1534.29Acetolactate synthase (Fragment) OS=Spirulina plat... [more]
POXB_ECOLI8.433e-1232.81Pyruvate dehydrogenase [cytochrome] OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189479 ID=CN189479; Name=CN189479; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTACATTGTAACTCATAGAGTTTGTTTGTTAAACA
AACACTAGTTCCATTAAAACTGACACCTGAACTAAAAACACTGCCACACA
CTCATAGGTAAGTTAAGCCTGCAACTCAAAAGGAACATAAATACATAGCC
AAGAAGGCATCTATGCTGCTTCAGCTTGTCGTTAATACTGCGTTCTTCCA
TCACCTTCAGTGATCACATCTTTAAAAGCTCCACCACTGGGGATCATAGG
CAGGACATGCTCTTGATGAGGAACGATGACGTCCAGAAGGTATGGTCCAG
GAGTGTCCAACATAGTCTGAATTGCGGCTCTCAGATCTGCCTTCCTTGTT
ACTTGTGCTCCAGGTATTCCACAGGCTTCTGCAAACTTCAACATATTCGG
AAATATTTCAGACTCTCTTGATGGATCTCCCAAATACGTGTGAGCCCTAT
TTGCCTTGTAAAACCGATCCTCCCATTGCATCACCATGCCCAAGTGCTGA
TTATTCAACAGCAATATCTTGATGGGGAGTTTCTCTACCTTAATAGTCGC
CAACTCCTGGACGTTCATGATGAAACTCCCATCACCATCAATATCTACAA
TGATGGCATCAGGATTTGCAACAGCAGCTCCGTATTGCAGCG
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