CN189473

Overview
NameCN189473
Unique NameCN189473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189473_ssr183 microsatellite CN189473_ssr183:183..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:22..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: LGMN_RAT (Legumain OS=Rattus norvegicus GN=Lgmn PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.398e-50
Identity = 93/167 (55.69%), Postives = 119/167 (71.26%), Query Frame = 3
Query:  159 GGGGAKVN-DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMP-----------TSRYIYADEL 620
            G G   +  DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA NEENP PGV+IN P+G DVYKGVPKDYTGEDVT ENF AV+ G++ A+ G GSGKV+ SGP DH+F++++DHG  G+L  P           T RY+Y  ++
Sbjct:   14 GAGAVHIGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIIVMMYDDIANNEENPTPGVVINRPNGTDVYKGVPKDYTGEDVTPENFLAVLRGDEEAVKGKGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHVKDLNKTIRYMYEHKM 180          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: LGMN_HUMAN (Legumain OS=Homo sapiens GN=LGMN PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.408e-49
Identity = 85/144 (59.03%), Postives = 112/144 (77.78%), Query Frame = 3
Query:  162 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMP 590
            G GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+FI+++DHG  G+L  P
Sbjct:   14 GIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFP 157          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: LGMN_MACFA (Legumain OS=Macaca fascicularis GN=LGMN PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.370e-49
Identity = 84/144 (58.33%), Postives = 112/144 (77.78%), Query Frame = 3
Query:  162 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMP 590
            G GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+F++++DHG  G+L  P
Sbjct:   14 GIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFVYFTDHGSTGILVFP 157          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: LGMN_MOUSE (Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.865e-48
Identity = 93/167 (55.69%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  159 GGGGAKVN-DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMP-----------TSRYIYADEL 620
            G G   V  DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA +EENP PGV+IN P+G DVYKGV KDYTGEDVT ENF AV+ G+  A+ G GSGKV+ SGP DH+FI+++DHG  G+L  P           T RY+Y  ++
Sbjct:   14 GAGAVPVGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIIVMMYDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVTPENFLAVLRGDAEAVKGKGSGKVLKSGPRDHVFIYFTDHGATGILVFPNDDLHVKDLNKTIRYMYEHKM 180          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: LGMN_PONAB (Legumain OS=Pongo abelii GN=LGMN PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.425e-48
Identity = 83/142 (58.45%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  168 GAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMP 590
            GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+F++ +DHG  G+L  P
Sbjct:   16 GAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFVYSTDHGSTGILVFP 157          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: LGMN_BOVIN (Legumain OS=Bos taurus GN=LGMN PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.998e-47
Identity = 87/165 (52.73%), Postives = 117/165 (70.91%), Query Frame = 3
Query:  162 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMP-----------TSRYIYADEL 620
            G GA   +D +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA +E+NP PG++IN P+G DVY+GV KDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+F++++DHG  G+L  P           T RY+Y  ++
Sbjct:   14 GTGAVPLEDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYQGVLKDYTGEDVTPKNFLAVLRGDAEAVKGVGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIRYMYEHKM 178          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: HGLB_SCHMA (Hemoglobinase OS=Schistosoma mansoni PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.637e-36
Identity = 74/153 (48.37%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  174 KVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVL 632
            +V+D+  S   +WAVL+AGSNG+ NYRHQAD+CHAY +LR  G+K E+II  MYDDIA+N  NP PG + N  +  D Y+GV  DY G++V  + F  V+ G+K+A     GKV+ SG ND +FI+++DHG PG++  P    +YA E +  L
Sbjct:   26 EVSDETVSDNNKWAVLVAGSNGYPNYRHQADVCHAYHVLRSKGIKPEHIITMMYDDIAYNLMNPFPGKLFNDYNHKDWYEGVVIDYRGKNVNSKTFLKVLKGDKSA----GGKVLKSGKNDDVFIYFTDHGAPGLIAFPDDE-LYAKEFMSTL 173          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: HGLB_SCHJA (Hemoglobinase OS=Schistosoma japonicum GN=HAEM PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.764e-36
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  207 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMP 590
            +WAVL+AGSNGF NYRHQAD+CHAY +L   G+K E+II FMYDDIA N+ENP PG I N     D YKGV  DY G+ V  + F  V+ G+K A     GKV+ SG ND +FI+++DHG PG+L  P
Sbjct:   31 KWAVLVAGSNGFENYRHQADVCHAYHVLLSKGVKPEHIITFMYDDIAHNKENPFPGKIFNDYRHKDYYKGVVIDYKGKKVNPKTFLQVLKGDKRA----GGKVLKSGKNDDVFIYFTDHGAPGILAFP 154          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: GPI8_DROME (Putative GPI-anchor transamidase OS=Drosophila melanogaster GN=CG4406 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.026e-19
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  210 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVV-DSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELID 626
            WAVL+  S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  NPRPG + N+       +GDD    V  DY G +VTVENF  ++ G     T  S K++ D+G N  + I+ + HGG G L    S  I + EL D
Sbjct:   47 WAVLVDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRPGQVYNNANQHINVYGDD----VEVDYRGYEVTVENFVRLLTGRTQNGTARSKKLLSDAGSN--VLIYLTGHGGDGFLKFQDSEEITSQELAD 186          
BLAST of CN189473 vs. ExPASy Swiss-Prot
Match: GPI8_MOUSE (GPI-anchor transamidase OS=Mus musculus GN=Pigk PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 64/196 (32.65%), Postives = 96/196 (48.98%), Query Frame = 3
Query:   57 ITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELID 626
            +  L ALA ++ GS   AG I     +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D
Sbjct:   11 VATLAALALLSLGS-SAAGHI---EDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRVPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELAD 185          
The following BLAST results are available for this feature:
BLAST of CN189473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
LGMN_RAT3.398e-5055.69Legumain OS=Rattus norvegicus GN=Lgmn PE=2 SV=1[more]
LGMN_HUMAN6.408e-4959.03Legumain OS=Homo sapiens GN=LGMN PE=1 SV=1[more]
LGMN_MACFA8.370e-4958.33Legumain OS=Macaca fascicularis GN=LGMN PE=2 SV=1[more]
LGMN_MOUSE1.865e-4855.69Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1[more]
LGMN_PONAB5.425e-4858.45Legumain OS=Pongo abelii GN=LGMN PE=2 SV=1[more]
LGMN_BOVIN5.998e-4752.73Legumain OS=Bos taurus GN=LGMN PE=1 SV=1[more]
HGLB_SCHMA1.637e-3648.37Hemoglobinase OS=Schistosoma mansoni PE=1 SV=3[more]
HGLB_SCHJA4.764e-3656.25Hemoglobinase OS=Schistosoma japonicum GN=HAEM PE=... [more]
GPI8_DROME9.026e-1938.36Putative GPI-anchor transamidase OS=Drosophila mel... [more]
GPI8_MOUSE3.792e-1732.65GPI-anchor transamidase OS=Mus musculus GN=Pigk PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189473 ID=CN189473; Name=CN189473; organism=Citrus sinensis; type=EST; length=634bp
GAGGAACCAATCAACCCCCTTCAAAAACCATGACGCGCCTTGCCTCCGGC
GTGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCAG
AGACATAGCAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCT
TCCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTC
GGCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTA
CAGGCATCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTG
GGCTGAAGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTC
AATGAAGAGAACCCGAGGCCTGGAGTCATCATTAACCACCCCCATGGCGA
TGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACTG
TTGAAAACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTACAGGG
GGCAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATATT
CTACTCAGATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGAT
ACATATATGCTGATGAACTGATCGATGTCTTAAA
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