EY676453

Overview
NameEY676453
Unique NameEY676453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  149 LYCLVSCSCVSGQP------ATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            L+ +VS + V   P        F  ++  TW+  H  Q  GG  +QL+LD+ +  GF SK  YLFG   M+IKL  GD+AG VTAFY++S + +     ++F+FL
Sbjct:   13 LFLMVSSTMVMAIPPRKAIDVPFGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFL 115          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  110 MAILRNAITLFVLLYCLVSCSCVSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNS 400
            MA++  +  +  LL   + CS      A F  D ++TW D        G  + L LD+ S  GF SK +YLFG++ M IKLV G+SAGTVTA+Y+ S
Sbjct:    1 MAMISYSTIVVALLASFMICSV----SANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKS 93          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  143 VLLYCLVSCSCVSGQP-----ATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            V L+ + S + ++  P       F  ++  TW+  H  Q+ GG  +QL+LD+ +  GF SK  YLFG   M+IKL  GD+AG VTAFY++S + +     ++F+FL
Sbjct:   11 VALFLMASSTVMAIPPRKAIDVPFGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFL 114          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  137 LFVLLYCLVSCS-CVSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            + +++  +VSC   VSG  A F E ++ +W+  H   +  G   +L LD  S  GF S+ KYLFG+V + IKLV GDSAGTVTAFYM+S          +F+FL
Sbjct:   10 VMMIMVLVVSCGEAVSG--AKFDELYRSSWAMDHC--VNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPN--HNEFDFEFL 107          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.502e-11
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  146 LLYCLVSCSCVSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            LL  +   S VS     F +DF VTWS  H+     GR+  L LDQ S   F+S + +LFG++ M IKL+ G S GTV A+YM+S      R  ++F+FL
Sbjct:   22 LLLWVSQASVVSS--GDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPN--RDEIDFEFL 117          
The following BLAST results are available for this feature:
BLAST of EY676453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
XTH4_ARATH3.027e-1239.05Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH23_ARATH3.027e-1241.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB3.954e-1237.74Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH9_ARATH5.164e-1243.27Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH10_ARATH1.502e-1142.00Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-H02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676453 ID=EY676453; Name=EY676453; organism=Citrus sinensis; type=EST; length=900bp
CGGGTTCCCGGGTCCCGGGATTCCCGGGGTCGACCCACGCATCCGAATTA
AAGTTCTCTCTCCCCCTTAATAACAGATAATATTTTATTGTACAGCTTGT
TTTCCCTCTATGGCTATCCTAAGAAATGCAATAACATTATTTGTGTTGCT
TTACTGTCTTGTATCCTGCTCTTGCGTTTCAGGGCAACCGGCTACTTTTC
TTGAGGATTTTAAAGTCACATGGTCCGATGCCCATCTCATGCAAATCGAG
GGAGGGAGGGCCATCCAGCTAGTTCTAGACCAAAATTCAAGATGTGGGTT
TGCTTCCAAAAAGAAATACTTGTTCGGGCGTGTAATCATGAATATCAAGC
TCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAATTCC
AAACACCGAAAATGATGCAGAACAAACTTGAATTTTGATTTCCTGGAGAA
CCCAACGGGTCAACCTGAGCCGGGTCCAAAACCAAATCCTATGCCAAATG
GAAAAAGGCAAATAAAAACAGAGAGTGGAACCCCTGGTTTGACCCTGCCT
GAAATTATACACTTTAACAATTTTTCTCAGGAACCATACACAAAATTAAC
TTCATAGATGAAAAAAGTGAACCACGAGGGTTATAAAAAAAAGAAAAGAA
AAGGCTCCAATTAATATAAAACACAAACAGATGGGGGAACACTAAAACTT
TTCTTCAAACAAAATCACAAAACATAAAAAAAAGTTTAAGAAAAAAAATG
AAAGAGAAGGAGAACTACAGTATTAAGAATGAAACAAAAAAAAATAAATG
AAATAGAGTGTTCACCGCCCTGACGATAAGAGCGCAAGCCAAATCACCGC
CAGTTGCAACAGTTGGGAATAACCACTTCTGAATCCTCCCTCACCTAATC
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