CN189468

Overview
NameCN189468
Unique NameCN189468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.345e-40
Identity = 82/149 (55.03%), Postives = 97/149 (65.10%), Query Frame = 1
Query:   73 KAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            KAV VL GT  V GTV F+QEG+  P  V+G ++GL PG HGFHVHA GD TNGC+S GPHFNP  K HG P D  RH              A   + D  + LSG +SIIGR +V+H   DDLGKGG+E S  TGNAGGR+ACG+IG+
Sbjct:    4 KAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:   70 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:   70 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:   70 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.593e-39
Identity = 80/150 (53.33%), Postives = 98/150 (65.33%), Query Frame = 1
Query:   70 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PEDE RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.386e-39
Identity = 80/148 (54.05%), Postives = 95/148 (64.19%), Query Frame = 1
Query:   73 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAGGR+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGI 150          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 79/148 (53.38%), Postives = 95/148 (64.19%), Query Frame = 1
Query:   73 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD+ I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 80/161 (49.69%), Postives = 97/161 (60.25%), Query Frame = 1
Query:   70 VKAVAVLGGT------------EGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            VKAV VL G             E VKG + F Q+G+GP T+SGS++GL  G HGFHVH  GD TNGC S G HFNP GK HG P+D  RH              A   + D+ I L+G  SIIGR +VVH   DDLGKGG++ S  TGNAG R+ACG++G+
Sbjct:    4 VKAVCVLKGEDPVKEPVKGPVKEPVKGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVGI 164          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 76/111 (68.47%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  190 HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 522
            HGFHVHALGDTTNGCMSTGPHFNP GKEHG P+DENRHA             A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSKTTGN+   +     G+QG
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQG 118          
BLAST of CN189468 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.287e-38
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 1
Query:   73 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 516
            KAV VL G   V+GT+ F  +G+    V+G++ GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              AT  + D+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151          
The following BLAST results are available for this feature:
BLAST of CN189468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DANRE2.345e-4055.03Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_MACMU4.000e-4054.00Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU4.000e-4054.00Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA4.000e-4054.00Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_CEBAP2.593e-3953.33Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_SHEEP3.386e-3954.05Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_BOSMU5.776e-3953.38Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_CARCR7.544e-3949.69Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODC_ASPJA7.544e-3968.47Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_PIG1.287e-3851.35Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189468 ID=CN189468; Name=CN189468; organism=Citrus sinensis; type=EST; length=714bp
GAGGTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCT
GAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTG
AGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACA
ACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCA
TGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCC
ACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGT
CATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTAC
TTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTA
TTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGC
GGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTG
CGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATA
AATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGA
GTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTAAAACTTTT
GTTGTGTATGTTGAATGGTTTTCGTATAATCTCCATCCTTTACATTTTAA
AAAAAAAAAAAAAA
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