CN189467
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26 Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = -2 Query: 284 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 604 KGTV F QE + P V+G + GL G HGFHVH GD TNGCMS+GPHFNP KEHG P DENRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGDNTNGCMSSGPHFNPRSKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26 Identity = 58/108 (53.70%), Postives = 66/108 (61.11%), Query Frame = -2 Query: 284 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 604 KGTV F QE + P V+G GL G HGFHVH GD TNGCMS+GPHFNP KEHG P DENRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26 Identity = 58/108 (53.70%), Postives = 66/108 (61.11%), Query Frame = -2 Query: 284 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 604 KGTV F QE + P V+G GL G HGFHVH GD TNGCMS+GPHFNP KEHG P DENRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26 Identity = 58/108 (53.70%), Postives = 66/108 (61.11%), Query Frame = -2 Query: 284 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 604 KGTV F QE + P V+G GL G HGFHVH GD TNGCMS+GPHFNP KEHG P DENRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25 Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = -2 Query: 284 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 604 KGTV F QE + P V+G + GL G HGFHVH G+ TNGCMS+GPHFNP KEHG P D NRH ++ D++I L G NSIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKITLFGANSIIGRTVVVHAD 113
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25 Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = -2 Query: 284 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 604 KG V F QE + P V+G + GL G HGFHVH GD TNGCMS+GPH+NP KEHG P DENRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20 Identity = 59/137 (43.07%), Postives = 74/137 (54.01%), Query Frame = -2 Query: 194 GTVSFSQEGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 601 G V F+Q GD V+GS++GL PG G HVH G N C+ GPHFNP + HGP RHA G A F L + IGRA+V+HA+ DDLG+ E S+TTGN+G R+AC IG + Sbjct: 47 GAVWFTQHGDY-MYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIHANRDDLGRNRDEGSRTTGNSGPRLACATIGFR 182
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 57/142 (40.14%), Postives = 71/142 (50.00%), Query Frame = -2 Query: 200 VKGTVSFSQEG-----DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 607 + G V F Q G + + G + H HVH GD + GC STGPH+NP G H P D G AT L+GP+SI+GRAVVVHA DDLGKGG++ S GNAG R+AC ++G Sbjct: 85 ITGLVLFRQLGPSSRLEASFNLEGFPAEQNTSNHAIHVHEFGDLSQGCESTGPHYNPLGVPHPQHPGDFGNFVVRDGRLWKHRMGLAT--------SLAGPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLACCVVG 218
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17 Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 191 HVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 514 HVH GD + GC STGPH+NP H P D A G A L+GP+SI+GRAVVVHA DDLG+GG++ S GNAG R+AC ++G+ G Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVCG 214
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17 Identity = 59/168 (35.12%), Postives = 75/168 (44.64%), Query Frame = -2 Query: 191 PRGVLRSHSTMVKAVAVLGGTEGVKGTVSFSQEGDGPTT-----VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 676 P G L + + + + V G V F Q G G + G HVH GD + GC STG H+NP +H P D A G A L+GP+SI+GRAVVVHA DDLG+GG+ S GNAG R+AC ++G G Sbjct: 59 PAGALHAVCRVQPSATLDAAQPRVSGLVVFRQLGPGAQLEAFFDLEGFPVEANLSSRAIHVHQFGDLSQGCDSTGAHYNPLAVQHPQHPGDFGNFAVRDGRLWKYRSGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLACCVVGASG 218 The following BLAST results are available for this feature:
BLAST of CN189467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 143
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189467 ID=CN189467; Name=CN189467; organism=Citrus sinensis; type=EST; length=710bpback to top |