CN189467

Overview
NameCN189467
Unique NameCN189467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 53/143 (37.06%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  200 VKGTVSFSQEGDGPT-----TVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHG--PPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 607
            + G V F Q G G       ++ G  +         HVH  GD + GC STGPH+NP    H   P +  N               TA+         L+GP++I+GR+VVVHA  DDLGKGG++ S   GNAG R+AC ++G
Sbjct:   92 ITGLVLFRQLGPGSRLEAYFSLEGFPAEQNASNRAIHVHEFGDLSQGCDSTGPHYNPMEVPHPQHPGDFGNFVVRNGQLWRHRVGLTAS---------LAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = -2
Query:  197 PNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 325
            PNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:  156 PNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DEIRA (Superoxide dismutase [Cu-Zn] OS=Deinococcus radiodurans GN=sodC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 50/153 (32.68%), Postives = 69/153 (45.10%), Query Frame = -2
Query:  206 VLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNG---------CMSTGPHFNP-AGKEHGPPEDENR--HAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGI 628
            +L  T  V GT +FS    G T VS  +SGLK GPHG H+H   +   G           + G HF+P A   H  P   N   H            G        N++ ++GP  ++GR++V+HAD DD        +   GN+GGR  CG+
Sbjct:   32 LLDQTGKVTGTATFSPSPIG-TRVSIEVSGLKAGPHGLHIHENPNCNPGPDAQGQTIPFGAAGGHFDPGASHNHDGPHARNDQGHGGDLPMITVGEDGKGRLNFDTNRLKMTGPTGVLGRSIVIHADADDY------QTNPAGNSGGRERCGV 177          
The following BLAST results are available for this feature:
BLAST of CN189467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODE_MOUSE1.801e-1637.06Extracellular superoxide dismutase [Cu-Zn] OS=Mus ... [more]
SODCP_POPTM5.423e-1374.42Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODC_DEIRA3.515e-1232.68Superoxide dismutase [Cu-Zn] OS=Deinococcus radiod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189467 ID=CN189467; Name=CN189467; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTTTTAAATGTAAAGATGGAGATTATACGAAAACCATT
CAACATACACAACAAAGTTTTAGATTTCTCTTATTCAAGATCATAGTCTT
GAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCAAAACATCAT
ATCAAATGAATTTATTATTGTCCGATGAGATGCGGCTTCATCCTTGGAGG
CCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGTGGTTTTGCT
CAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGTGGACTACAA
CAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGAGGAATCTGATTGTCA
ACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGACATTTCCTAA
GTCACCAGCATGACGATTCTCATCCTCTGGAGGTCCATGTTCTTTTCCAG
CAGGGTTAAAGTGGGGTCCGGTAGACATGCAACCATTTGTTGTGTCTCCA
AGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACCAGAGAGGCT
TCCTGATACAGTTGTTGGACCATCTCCTTCCTGGGAAAAGGAAACAGTTC
CCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTCACCATTGTG
CTGTGTGATCTCAGAACACCCCTTGGAGGGAGGAAAATGAAAAAGGCTTG
TAGAGAGACC
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