CN189467

Overview
NameCN189467
Unique NameCN189467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 87/151 (57.62%), Postives = 102/151 (67.55%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 646
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 85/137 (62.04%), Postives = 95/137 (69.34%), Query Frame = -2
Query:  197 KGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 604
            KGTV F QE +  P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH            G     + D +I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 8.578e-43
Identity = 87/151 (57.62%), Postives = 101/151 (66.89%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 646
            +VKAV V+ G    KGTV F QE  + P  VSG + GL    HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 85/149 (57.05%), Postives = 104/149 (69.80%), Query Frame = -2
Query:  197 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 643
            +KAV VL G+  VKGT++F Q+  G  TV+G +SGL PG HGFH+H  GD TNGC S+G HFNP  + HG PED+ RH            G AT  + D  I L+G +SIIGRAVVVHA  DDLGKGGHE SKTTG+AGGR++CG+IG+
Sbjct:    3 IKAVCVLVGS--VKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.261e-42
Identity = 85/151 (56.29%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 646
            +VKAV V+ G   VKGTV F Q+    P  V+G ++GL  G HGFHVH  GD TNGC S GPHFNP G  HG P D NRH            G     + D  I L G NSI+GR +VVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--VKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 8.028e-41
Identity = 80/148 (54.05%), Postives = 96/148 (64.86%), Query Frame = -2
Query:  197 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 640
            KAV VL G   V+G + F Q+ +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH            G A  ++ D+ I LSG NSIIGR +VVH  PDDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.049e-40
Identity = 83/150 (55.33%), Postives = 101/150 (67.33%), Query Frame = -2
Query:  197 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 643
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PEDE RH            G A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.049e-40
Identity = 83/149 (55.70%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  200 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 646
            MVKAV VL G+  VKG V F Q+ DG  TV G + GL  G HGFH+H  GD TNGC+S GPHFNP  K HG P+D +RH            G A F   D QI L G  SIIGR  VVH   DDLGKGG + S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHV-GDLGNVTAEGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIG 148          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.369e-40
Identity = 82/149 (55.03%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  200 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 646
            MVKAV VL G+  VKG V F Q+ +G  +V G + GL  G HGFH+H  GD TNGCMS G HFNP  K HG P D +RH            G A F + D+ I L GPNSIIGR  VVH   DDLGKGG++ S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHV-GDLGNVTAEGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148          
BLAST of CN189467 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.789e-40
Identity = 86/150 (57.33%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  197 KAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 640
            KAV VL G   V GTV F Q+ +  P  VSG + GL  G HGFHVH  GD TNGC S G HFNP  ++HG P    RH               T  ++ D+QI L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct:    4 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 151          
The following BLAST results are available for this feature:
BLAST of CN189467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROTE2.257e-4357.62Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_DROBS2.257e-4362.04Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROER8.578e-4357.62Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_HALRO5.560e-4257.05Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_CERCA7.261e-4256.29Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_CAVPO8.028e-4154.05Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC_CALJA1.049e-4055.33Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC1_XENLA1.049e-4055.70Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC2_XENLA1.369e-4055.03Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_BOMMO1.789e-4057.33Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189467 ID=CN189467; Name=CN189467; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTTTTAAATGTAAAGATGGAGATTATACGAAAACCATT
CAACATACACAACAAAGTTTTAGATTTCTCTTATTCAAGATCATAGTCTT
GAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCAAAACATCAT
ATCAAATGAATTTATTATTGTCCGATGAGATGCGGCTTCATCCTTGGAGG
CCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGTGGTTTTGCT
CAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGTGGACTACAA
CAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGAGGAATCTGATTGTCA
ACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGACATTTCCTAA
GTCACCAGCATGACGATTCTCATCCTCTGGAGGTCCATGTTCTTTTCCAG
CAGGGTTAAAGTGGGGTCCGGTAGACATGCAACCATTTGTTGTGTCTCCA
AGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACCAGAGAGGCT
TCCTGATACAGTTGTTGGACCATCTCCTTCCTGGGAAAAGGAAACAGTTC
CCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTCACCATTGTG
CTGTGTGATCTCAGAACACCCCTTGGAGGGAGGAAAATGAAAAAGGCTTG
TAGAGAGACC
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