CN189466

Overview
NameCN189466
Unique NameCN189466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  420 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG---ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG 680
            P   DWR  G VT ++DQ  CGSC++F +  ALEG   +  G     + LSE+ +V C  +       + ++GCNGGL ++ ++YI++ G
Sbjct:   95 PESVDWRKEGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMVQCTRD-------NGNNGCNGGLGSNVYDYIIEHG 177          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  165 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRR-QLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG 680
            F  +  K +K Y T+ E  YR  ++ +N R  +   Q  D T   G  +F  L+  EF   +L  +    +       P +    L    DWR++   T VK+QG C S W+FS + +LE  + +   + ++ S QQ+VDCD+          ++GC+GG    A EY+L+ G
Sbjct:   29 FERWALKNNKFY-TESEKLYRMEIYNSNKRMIEEHNQREDVTYQMGENQFMTLSHEEFVDLYLQKSDS-SVNIMGASLPEVQLEGLGA-VDWRNY---TTVKEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDCDYN---------NTGCSGGYNAYAMEYVLRVG 186          
The following BLAST results are available for this feature:
BLAST of CN189466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CPP2_ENTHI1.271e-1136.67Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CATL3_PARTE3.697e-1130.06Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189466 ID=CN189466; Name=CN189466; organism=Citrus sinensis; type=EST; length=692bp
GACGGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTCCTCCTCCTA
TCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGATGCTATGAT
CAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATCATCTCCTGA
ACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACTTAC
GCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAATCT
GCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACGGTG
TCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTCCTT
GGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAAGGCTCCTAT
TCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACGGCG
CCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCGTTT
AGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGAGCT
TGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTGTGATC
CAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAATGAAC
TCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGA
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