CN189466

Overview
NameCN189466
Unique NameCN189466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189466_ssr33 microsatellite CN189466_ssr33:33..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:106..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28
Identity = 70/166 (42.17%), Postives = 98/166 (59.04%), Query Frame = 3
Query:  213 EHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLN----RRLRLPADAQK--APILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 686
            + D RF +FK NLR        +  A +  G+T F++LT  E+R  +LG      RR+    +     +  +  +++P   DWR  GAV  +KDQG CGSCW+FS   A+EG + + TGELVSLSEQ+LVDCD         S + GCNGGLM+ AF++I+K GG+
Sbjct:   24 QQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDK--------SYNQGCNGGLMDYAFQFIMKNGGL 181          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 74/169 (43.79%), Postives = 103/169 (60.95%), Query Frame = 3
Query:  192 KTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLNRRLRLPAD-AQKAPILPTNDLPTDFDWRDHGAVTG-VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 686
            K Y    E + RF++FK NL+R +     DP   +  G+ KFSDLT  EF+  +LG     +  +D A++      + LP + DWR+ GAV   VK QG CGSCW+F+ATGA+EG + ++TGELVSLSEQ+L+DCD        G+ + GC GG    AFE+I + GG+
Sbjct:   50 KNYNGLGEKERRFKIFKDNLKRIEEHNS-DPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLSDVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDCDR-------GNDNFGCAGGGAVWAFEFIKENGGI 210          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 72/187 (38.50%), Postives = 108/187 (57.75%), Query Frame = 3
Query:  144 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ---KAPIL--PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            LL A ++F  F  +F+K Y ++ E   RF++F+ NL     +   D +A + + KFSDL+  E   ++ GL+    LP   Q   K  +L  P    P +FDWR    VT VK+QG CG+CW+F+   +LE    +   +L++LSEQQ++DCD           D+GCNGGL+++AFE I+K GGV+
Sbjct:   21 LLKAPNYFEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIIIKNQND-SAKYEINKFSDLSKDETIAKYTGLS----LPIQTQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCDF---------VDAGCNGGLLHTAFEAIIKMGGVQ 193          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 71/170 (41.76%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  204 TQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-----PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVDCDHECDPEESGSC-DSGCNGGLMNSAFEYILKAGGVE 689
            + EE + RF +FKAN+             V G+  F+D+T  E+R  +LG       P DA    + P+  +         DWR  GAVT +K+QG CG CWSFSATGA EGA +++ G  +L S+SEQQL+DC        SGS  ++GC GGLM  AFEYI+  GG++
Sbjct:   42 SSEEFNGRFNIFKANMDYINEWNTKGSETVLGLNVFADITNEEYRATYLGT------PFDASSLEMTPSEKVFGGVQANSVDWRAKGAVTPIKNQGECGGCWSFSATGATEGAQYIANGDSDLTSVSEQQLIDC--------SGSYGNNGCEGGLMTLAFEYIINNGGID 197          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 67/192 (34.90%), Postives = 107/192 (55.73%), Query Frame = 3
Query:  150 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-NRRLRL----------PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVER 692
            +A  +F  F ++++K Y +++E  YR+ +F+ N+    ++   + +AV+ + +F+D+  +E   +  GL +  L L          PA  Q+         P  FDWR    +T VKDQG CG+CW F++ GALE  + +    L+ LSEQQLVDCD           D GC+GGL+++A+E I+K GGVE+
Sbjct:   35 SAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASGELGLNFCETIVVDGPAQRQR---------PVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQ 208          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 73/179 (40.78%), Postives = 98/179 (54.75%), Query Frame = 3
Query:  153 AEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT-KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPT---DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKA 677
            A  H+  FK +  K +    E  +RF  FK N++ A      +P A + V+ KF+DLTP EF + +L  +   R   D  K  +   +  P+     DWRD GAVT VK+QG CGSCW+FSA G +EG    S   LVSLSEQ LV CD         + D GCNGGLM+ A  +I+++
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKD-HKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQS 206          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 68/186 (36.56%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  150 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPT-------NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 686
            NA+  F+ F  K++K Y   +E + RF +FK NL     R  L+ +A+  +   +D++ +E  ++  GL   L +  + + +   PT         +P  FDWRD  +VT VK Q  CGSCW+FSA   +E  + +     + LSEQQLVDCD           ++GCNGGLM+ AFE I++AGG+
Sbjct:   38 NAQELFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNELLQKLTGLKLSL-MRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD---------KVNNGCNGGLMSWAFEGIIRAGGI 213          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 70/166 (42.17%), Postives = 96/166 (57.83%), Query Frame = 3
Query:  213 EHDYRFRVFKANLR-------RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            EH+ RF VF  NL+       RA  R         G+ +F+DLT  EFR  FLG     R  A  ++       +LP   DWR+ GAV  VK+QG CGSCW+FSA   +E  + L TGE+++LSEQ+LV+C        +   +SGCNGGLM+ AF++I+K GG++
Sbjct:   70 EHERRFLVFWDNLKFVDAHNARADERGGFRL----GMNRFADLTNEEFRATFLGAKVAERSRAAGERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVEC-------STNGQNSGCNGGLMDDAFDFIIKNGGID 224          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 72/165 (43.64%), Postives = 95/165 (57.58%), Query Frame = 3
Query:  213 EHDYRFRVFKANLR--RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP-----ILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 686
            E   RF  FK+N     +  ++   P  +H + +F D+  +EFR  F+G  RR   PA     P      L  +DLP   DWR  GAVTGVKDQG CGSCW+FS   ++EG + + TG LVSLSEQ+L+DCD         + + GC GGLM++AFEYI   GG+
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLH-LNRFGDMDQAEFRATFVGDLRR-DTPAKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD--------TADNDGCQGGLMDNAFEYIKNNGGL 215          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 73/186 (39.25%), Postives = 97/186 (52.15%), Query Frame = 3
Query:  144 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRA----KRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            L  A   +  FK+++ + Y   +E  YR RVF+ N +      K+ +  + T    + +F D+T  EF     G  +  R   + +         +  D DWR    VT VKDQ  CGSCW+FSATGALEG HFL   ELVSLSEQQLVDC  +         + GC GG M SAF+YI   GG++
Sbjct:   13 LATASPSWDHFKTQYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSR--GEPKAVFTAEAGPMAADVDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDCSTDYG-------NDGCGGGWMTSAFDYIKDNGGID 189          
The following BLAST results are available for this feature:
BLAST of CN189466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CYSP4_BRANA1.144e-2842.17Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR2_ARATH1.494e-2843.79Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATV_NPVRO1.951e-2838.50Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CYSP6_DICDI4.346e-2841.76Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
CATV_NPVSE4.346e-2834.90Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CYSP1_LEIPI5.677e-2840.78Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATV_GVXN5.677e-2836.56Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
ORYB_ORYSJ1.265e-2742.17Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_HORVU1.265e-2743.64Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSP3_HOMAM1.652e-2739.25Digestive cysteine proteinase 3 OS=Homarus america... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189466 ID=CN189466; Name=CN189466; organism=Citrus sinensis; type=EST; length=692bp
GACGGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTCCTCCTCCTA
TCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGATGCTATGAT
CAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATCATCTCCTGA
ACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACTTAC
GCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAATCT
GCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACGGTG
TCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTCCTT
GGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAAGGCTCCTAT
TCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACGGCG
CCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCGTTT
AGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGAGCT
TGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTGTGATC
CAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAATGAAC
TCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGA
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