CN189461

Overview
NameCN189461
Unique NameCN189461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189461_ssr17 microsatellite CN189461_ssr17:17..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13557 contig Csv1_Contig13557:20..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_FLAPJ (Enolase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=eno PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.175e-60
Identity = 128/218 (58.72%), Postives = 151/218 (69.27%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAPN 730
            I  + ARQIFDSRGNPT+EVDV T +G + RAAVPSGASTG +EA+ELRDGG  YLGKGV KAV NVN II   L G    EQ  ID  M+  LDGT N     K  LGANAIL VSLA  KA A+   +PLY++I  +S N    LPVP  N+INGGSH+   +A QEFMI+PV A+SF +AM+MG E++HHLK V+  R    +T VGDEG FAPN
Sbjct:    4 IIKIHARQIFDSRGNPTIEVDVVTENGVLGRAAVPSGASTGEHEAMELRDGGKAYLGKGVLKAVENVNTIIASELLGTSVFEQNLIDKIMI-DLDGTPN-----KSNLGANAILGVSLAAAKAAANELGLPLYRYIGGVSAN---TLPVPMMNIINGGSHSDAPIAFQEFMIIPVKAASFTQAMQMGTEIFHHLKKVLHDR--GLSTAVGDEGGFAPN 210          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_ALTAL (Enolase OS=Alternaria alternata GN=ENO PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 6.175e-60
Identity = 130/224 (58.04%), Postives = 160/224 (71.43%), Query Frame = 2
Query:   71 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAPN 730
            +TIT + AR ++DSRGNPTVEVD+ T  G + RA VPSGASTG +EA ELRDG  S + GKGV+KAV+NVN  I PAL  +  D  +Q+A+D ++  +LDGT N     K  LGANAIL VS+A+ KA A  K +PLY HI++L+G K   VLPVP  NV+NGGSHAG +LA QEFMI+P  A +F EAM+ G EVY  LKA+ KK YGQ A NVGDEG  AP+
Sbjct:    1 MTITKIHARSVYDSRGNPTVEVDIVTETG-LHRAIVPSGASTGSHEACELRDGDKSKWGGKGVTKAVANVNDTIAPALIKEKLDVKDQSAVDAFL-NKLDGTTN-----KTNLGANAILGVSMAIAKAAAAEKGVPLYAHISDLAGTKKPYVLPVPFQNVLNGGSHAGGRLAFQEFMIVPCEAPTFSEAMRQGAEVYQKLKALAKKTYGQSAGNVGDEGGVAPD 217          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_ASPFU (Enolase OS=Aspergillus fumigatus GN=enoA PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 8.065e-60
Identity = 131/222 (59.01%), Postives = 158/222 (71.17%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAPN 730
            I+ + AR ++DSRGNPTVEVDV T  G + RA VPSGASTG +EA ELRDG  + + GKGV KAV NVN  IGPAL  +  D  +Q+ +D ++  +LDGT N     K  LGANAIL VSLAV KAGA  K +PLY HI++L+G K   VLPVP  NV+NGGSHAG +LA QEFMI+P  A SF EA++ G EVY  LKA+ KK+YGQ A NVGDEG  AP+
Sbjct:    3 ISKIHARSVYDSRGNPTVEVDVVTETG-LHRAIVPSGASTGQHEAHELRDGDKTQWGGKGVLKAVKNVNETIGPALIKENIDVKDQSKVDEFL-NKLDGTAN-----KSNLGANAILGVSLAVAKAGAAEKGVPLYAHISDLAGTKKPYVLPVPFQNVLNGGSHAGGRLAFQEFMIVPDSAPSFSEALRQGAEVYQKLKALAKKKYGQSAGNVGDEGGVAPD 217          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_THEGJ (Enolase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eno PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 130/217 (59.91%), Postives = 152/217 (70.05%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAP 727
            ITAV AR+I DSRGNPTVEV+V T    + RAAVPSGASTG +EALELRDGG  + GKGV +AV NVN II P + G D T Q  ID  M++ LDGT N     K  LGANAIL VSLAV KA A+   +PLY++I    G    V+PVP  NVINGG HAGN+L  QEFMI+PVGA SF E ++   E YH LK VI ++YG++A NVGDEG FAP
Sbjct:    7 ITAVVAREILDSRGNPTVEVEVYTPVS-MGRAAVPSGASTGTHEALELRDGGKRFHGKGVRRAVENVNKIIAPEIIGMDVTWQRDIDMLMIE-LDGTEN-----KSNLGANAILGVSLAVAKAAANALGLPLYQYIG---GTNAYVMPVPMSNVINGGVHAGNELDFQEFMIMPVGAKSFREGIRWVSETYHTLKKVIAEKYGKNAVNVGDEGGFAP 213          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_PSEAE (Enolase OS=Pseudomonas aeruginosa GN=eno PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 128/220 (58.18%), Postives = 154/220 (70.00%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAPN 730
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M++ LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G      +PVP  N+INGG HA N + +QEFM+ PVGA +F EA++MG E++HHLKAV+K R G + T VGDEG FAPN
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMIE-LDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNGTPGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAVLKAR-GLN-TAVGDEGGFAPN 215          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_PSEAB (Enolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=eno PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 128/220 (58.18%), Postives = 154/220 (70.00%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAPN 730
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M++ LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G      +PVP  N+INGG HA N + +QEFM+ PVGA +F EA++MG E++HHLKAV+K R G + T VGDEG FAPN
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMIE-LDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNGTPGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAVLKAR-GLN-TAVGDEGGFAPN 215          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_PSEA8 (Enolase OS=Pseudomonas aeruginosa (strain LESB58) GN=eno PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 128/220 (58.18%), Postives = 154/220 (70.00%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAPN 730
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M++ LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G      +PVP  N+INGG HA N + +QEFM+ PVGA +F EA++MG E++HHLKAV+K R G + T VGDEG FAPN
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMIE-LDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNGTPGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAVLKAR-GLN-TAVGDEGGFAPN 215          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_PSEA7 (Enolase OS=Pseudomonas aeruginosa (strain PA7) GN=eno PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 128/220 (58.18%), Postives = 154/220 (70.00%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAPN 730
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M++ LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G      +PVP  N+INGG HA N + +QEFM+ PVGA +F EA++MG E++HHLKAV+K R G + T VGDEG FAPN
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMIE-LDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNGTPGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAVLKAR-GLN-TAVGDEGGFAPN 215          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_METJA (Enolase OS=Methanocaldococcus jannaschii GN=eno PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 128/217 (58.99%), Postives = 151/217 (69.59%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAP 727
            I  + AR++ DSRGNPTVEV+V T       A VPSGASTG +EALELRD    + GKGV  AV NVN+II P + G D   Q  ID  M++ LDGT N     K +LGANAILAVSLAV KA A   KIPLYK+   L G  + V+PVP  NVINGG HAGN L +QEFMI+PVGA+S  EA++MG EVYH LK VI ++YG++A NVGDEG FAP
Sbjct:    7 IKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGKGVLMAVENVNSIIRPEILGYDARMQREIDTIMIE-LDGTPN-----KSRLGANAILAVSLAVAKAAAATAKIPLYKY---LGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAP 214          
BLAST of CN189461 vs. ExPASy Swiss-Prot
Match: ENO_METVS (Enolase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eno PE=3 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.376e-59
Identity = 121/217 (55.76%), Postives = 147/217 (67.74%), Query Frame = 2
Query:   77 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFXEAMKMGVEVYHHLKAVIKKRYGQDATNVGDEGSFAP 727
            I  +KARQ+ DSRGNPT+E +V T+      A VPSGASTG +EA+ELRD G  Y GKGV  AV NVN II P L G+D   Q  IDN M+  LDGT N     K  LGANAILAVS+AV +A A    +PLYK+   L G  + ++PVP  NV+NGG HAGN L  QEFMI+P+GA SF +A++M  E Y  LK VI ++YG+DA N+GDEG FAP
Sbjct:    7 IYEIKARQVLDSRGNPTIEAEVLTAGRGYGHAIVPSGASTGTFEAVELRDLGKKYGGKGVLNAVGNVNEIIAPELIGEDSRNQRLIDNIMIN-LDGTEN-----KANLGANAILAVSMAVARAAADTSSLPLYKY---LGGCNSYIMPVPMMNVLNGGKHAGNALDFQEFMIMPIGADSFSDAVRMCAETYQSLKKVISEKYGKDAVNIGDEGGFAP 214          
The following BLAST results are available for this feature:
BLAST of CN189461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_FLAPJ6.175e-6058.72Enolase OS=Flavobacterium psychrophilum (strain JI... [more]
ENO_ALTAL6.175e-6058.04Enolase OS=Alternaria alternata GN=ENO PE=1 SV=2[more]
ENO_ASPFU8.065e-6059.01Enolase OS=Aspergillus fumigatus GN=enoA PE=1 SV=3[more]
ENO_THEGJ1.053e-5959.91Enolase OS=Thermococcus gammatolerans (strain DSM ... [more]
ENO_PSEAE1.053e-5958.18Enolase OS=Pseudomonas aeruginosa GN=eno PE=3 SV=1[more]
ENO_PSEAB1.053e-5958.18Enolase OS=Pseudomonas aeruginosa (strain UCBPP-PA... [more]
ENO_PSEA81.053e-5958.18Enolase OS=Pseudomonas aeruginosa (strain LESB58) ... [more]
ENO_PSEA71.053e-5958.18Enolase OS=Pseudomonas aeruginosa (strain PA7) GN=... [more]
ENO_METJA1.053e-5958.99Enolase OS=Methanocaldococcus jannaschii GN=eno PE... [more]
ENO_METVS1.376e-5955.76Enolase OS=Methanococcus vannielii (strain SB / AT... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001O09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189461 ID=CN189461; Name=CN189461; organism=Citrus sinensis; type=EST; length=731bp
GAGGTGCACTCACAGACTCTCTCTCTCGTTCTAGATCTTTCTTCGCTTTT
CCAGCTTTCAGAAAATGGCAATAACCATCACTGCCGTCAAAGCCAGGCAG
ATCTTTGACAGCCGTGGAAATCCAACGGTGGAGGTCGACGTGACAACATC
AGATGGCCACGTGGCTAGAGCTGCTGTTCCAAGCGGTGCATCCACCGGAA
TTTATGAGGCGCTTGAACTAAGAGACGGAGGCTCTGATTACCTAGGCAAG
GGTGTATCGAAGGCTGTTAGCAATGTCAACGCCATCATTGGCCCTGCACT
CGCTGGCAAGGACCCAACTGAGCAGACTGCTATTGACAACTATATGGTAC
AACAACTTGATGGAACTGTAAATGAGTGGGGTTGGTGCAAACAGAAGCTT
GGAGCAAACGCCATTTTGGCTGTCTCCCTAGCTGTCTGCAAGGCTGGTGC
ACATGTCAAGAAGATTCCTCTTTACAAGCATATTGCCGAACTCTCTGGTA
ACAAGAATTTGGTGTTGCCAGTGCCAGCATTCAATGTCATTAATGGTGGA
TCACATGCTGGAAACAAACTTGCTATGCAGGAGTTTATGATTCTTCCTGT
AGGAGCTTCCTCTTTCANAGAAGCCATGAAGATGGGTGTAGAAGTATATC
ACCATCTGAAGGCTGTGATTAAAAAGAGATACGGCCAGGATGCTACAAAT
GTTGGTGATGAAGGCAGTTTTGCTCCCAATA
back to top