CN189457

Overview
NameCN189457
Unique NameCN189457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  282 PSESGADEAAV-------MTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            P+ SG+ +AAV         M+  AP P        PPPFL KTY+MVDDP+T+++VSWS    SFVVWDP  F+  LLP++FK
Sbjct:    3 PNSSGSGKAAVGDGGGGGAPMLQPAPAPAPMPSANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFK 86          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.237e-15
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 3
Query:  336 PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRG--GVSFVVWDPHAFSTSLLPRHFK 512
            P+PMEGL + GP PF+ KTYEMV D  T+ VVSW  G  G SFVVWDPHA +  +LPR FK
Sbjct:   80 PRPMEGLGEAGPAPFVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFK 140          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  282 PSESGADEAAV-----MTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            P+  G+ +AAV       M+  AP P        PPPFL KTY+MVDDP+T+++VSWS    SFVVWDP  F+  LLP++FK
Sbjct:    3 PNSYGSGKAAVGDGVGAPMLQTAPAPAPIPSANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFK 84          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  285 SESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            S+ G D  ++ T     PQP   L    PPPFL+KTY+MVDD NT+ +VSWS    SF+VW P  F+  LLP++FK
Sbjct:    9 SDGGGD--SMETKPSPQPQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFK 82          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  366 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            GPPPFL KTYEMV+D  TN VVSW  GG SFVVW+P  FS  LLP++FK
Sbjct:   17 GPPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFK 65          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.603e-13
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  336 PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            P P+EGL +T P  FLTKTY +V+D +TN +VSWSR   SF+VW+P  F+   LPR FK
Sbjct:    6 PIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFK 64          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  261 EEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGP--PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            ++  GG P +  A   + +  +M  P+P+E L   GP  PPFL+KTY++V +P  + V+SW   G SFVVWDP AF+  +LP HFK
Sbjct:   29 DDDGGGEPLQP-APFVSPLDQLMQPPRPLEALLQ-GPQLPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFK 112          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  366 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            G PPFLTKTY MV+DP+T+E +SW+  G +FVVW P  F+  LLP+HFK
Sbjct:    7 GTPPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFK 55          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  246 YYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPP--PFLTKTYEMVDDPNTNEVVSWSRGGV---SFVVWDPHAFSTSLLPRHFK 512
            Y  +K+E+   +  + G +EAA      AAP P+      G    PFL KT+EMV+DP T+ VVSW  GG    SFVVWDPHAF+  LLP HFK
Sbjct:    3 YSTVKQEEVEVVVLD-GEEEAAAA----AAPVPLPAAMGVGAAVAPFLVKTFEMVEDPATDAVVSW--GGAARNSFVVWDPHAFAAGLLPLHFK 89          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.039e-12
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 3
Query:  291 SGADEAAVMTMMMAAPQPMEGLHD---TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            + A  AA       AP P   + +   T PPPFL KTYEMVDDP T+ VVSW  G  SFVVW+   F+  LLP++FK
Sbjct:    6 AAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFK 82          
The following BLAST results are available for this feature:
BLAST of CN189457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HSF8_SOLPE1.004e-1548.81Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HFA6B_ORYSJ2.237e-1562.30Heat stress transcription factor A-6a OS=Oryza sat... [more]
HSF8_SOLLC2.921e-1548.78Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA1D_ARATH3.230e-1448.68Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA4D_ORYSJ7.196e-1469.39Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA6A_ARATH1.603e-1355.93Heat stress transcription factor A-6a OS=Arabidops... [more]
HSFA3_ORYSJ2.734e-1344.19Heat stress transcription factor A-3 OS=Oryza sati... [more]
HFB2A_ORYSJ6.092e-1361.22Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFA6A_ORYSJ7.956e-1347.87Putative heat stress transcription factor A-6a OS=... [more]
HSFA1_ORYSJ1.039e-1249.35Heat stress transcription factor A-1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189457 ID=CN189457; Name=CN189457; organism=Citrus sinensis; type=EST; length=514bp
AAATATCAGTGCCACTTTGTCTTTTTATCAACTTTCTTTTTGACCTTTTT
TGTTTTTCCTTAACCATGGGCATCAATTTGAGTTTCCATAAGTTAATCAT
ACAATTCACCTGTTGATTCAATTGTTCTCTTCTTATACACACACACACAC
ACACACACATAAGTCTTCTCCGACTGCTCCGTTTTTCTTTTTTCGCTTCT
TCGTTTATAAACGATCAGAATCTTTCATTAGGCTAAATGAATCCGTATTA
CATGATAAAAGAAGAGCAGCCGGGTGGGATTCCATCGGAATCCGGAGCCG
ATGAGGCAGCAGTAATGACGATGATGATGGCGGCGCCGCAGCCGATGGAA
GGTCTGCATGACACAGGGCCGCCGCCGTTTCTGACGAAGACATATGAAAT
GGTGGATGACCCAAATACAAATGAAGTAGTTTCTTGGAGCAGGGGAGGTG
TTAGCTTTGTTGTTTGGGACCCTCATGCTTTCTCCACTTCTCTTCTTCCT
AGACACTTCAAGCA
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