CN189453

Overview
NameCN189453
Unique NameCN189453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3249 contig Csv1_Contig3249:207..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP2_ARATH (Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 57/102 (55.88%), Postives = 70/102 (68.63%), Query Frame = -2
Query:  306 KSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETKS 608
            +S  S  +R  P R  VSCAAKPETVDKVC +V+KQL+L     +T  +KFAALGADSLDTVEIVMGL          E AQ+I+TV+ AA LIE+L+  K+
Sbjct:   34 RSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKA 135          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP1_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  309 RSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 584
            RS P R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL          E AQ I+TV++AA+LI++L++ K
Sbjct:   41 RSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSLDTVEIVMGLEEEFHIEMAEEKAQKITTVEEAAELIDELVQAK 133          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP3_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = -2
Query:  309 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 596
            +LR     R  VSCAAKPET++KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL          E AQ I+TV++AA+LIE+L+  K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETIEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVLLK 133          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP1_SPIOL (Acyl carrier protein 1, chloroplastic OS=Spinacia oleracea GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = -2
Query:  306 KQTQGRXXXXXXXXXXXNGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETKS 665
            K +QG               SFP+LR  ++ R     AAK ET+DKVC IVK++LAL AD  VT +S+F+ LGADSLDTVEIVM L          + AQ IST+Q AAD+IE L+E K+
Sbjct:   21 KLSQGNGRCSSIVCLDWGKSSFPTLR--TSRRRSFISAAKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIESLLEKKA 138          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP3_ARATH (Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  306 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETKS 596
            S  +R  P R  V CAAKPETVDKVC +V+KQL+L     +T  +KFAALGADSLDTVEIVMGL          E AQ+I+TV+ AA LIE+L+  K+
Sbjct:   38 SFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLLEKA 135          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP1_ARATH (Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=ACP-1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = -2
Query:  309 SFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 605
            SF   R   + R  VSCAAK ET++KV  IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL          E AQ I+TV+ AA+LIE+LI  K
Sbjct:   38 SFNLRRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP2_SPIOL (Acyl carrier protein 2, chloroplastic OS=Spinacia oleracea GN=ACL1.2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = -2
Query:  309 VSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 563
            VSCAAKPE V KV  IVK QLAL  D  VTGE+KF+ +GADSLDTVEIVM L          E+AQTI+T+Q+AAD+IE L + K
Sbjct:   46 VSCAAKPEMVTKVSDIVKSQLALAEDAKVTGETKFSEIGADSLDTVEIVMKLEEEFGVTVEEENAQTITTIQEAADMIEALQQNK 130          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP5_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.C1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  309 SAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 581
            S  R  +SCAAK ETV+KV +IVKKQL+L  D  V  E+KF  LGADSLDTVEIVMGL          E AQ I+TV+ AA+LIE+L++ K
Sbjct:   43 SRTRLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADSLDTVEIVMGLEEEFGIQMAEEKAQKIATVEQAAELIEELMQAK 133          
The following BLAST results are available for this feature:
BLAST of CN189453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP2_ARATH1.382e-2055.88Acyl carrier protein 2, chloroplastic OS=Arabidops... [more]
ACP1_BRANA1.382e-2060.22Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP3_BRANA4.021e-2057.29Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP1_SPIOL6.860e-2048.33Acyl carrier protein 1, chloroplastic OS=Spinacia ... [more]
ACP3_ARATH8.959e-2056.12Acyl carrier protein 3, chloroplastic OS=Arabidops... [more]
ACP1_ARATH3.404e-1956.57Acyl carrier protein 1, chloroplastic OS=Arabidops... [more]
ACP2_SPIOL4.446e-1961.18Acyl carrier protein 2, chloroplastic OS=Spinacia ... [more]
ACP5_BRANA7.584e-1957.14Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189453 ID=CN189453; Name=CN189453; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTAAATAATCTCTTGTTCAGTCATTATATATTGTTTTC
TCCTTTGATTGACTTATTGTGAAGCCGATAACAGGGTCCACAACCGAAAA
CTGGAACATGTTTATGATTGATTCCAAGCAAACTGATTAATTGAGTTCTC
TCTAATAGAAGGAACAACAGAATAGAAAAACCACTGACAAGTTCACAATA
CAAGCTAGAAACTCCTTGAGACAAGCCAACAAAAAGATCGAAAACGAAAC
TAGACGAACTAAGTCCCTAAGCCCCGGCTCTCTCTCCAGACCATTTTAAT
TAAGCACTCTTGGTCTCAATGAGCTTCTCAATCAGATCTGCAGCATCTTG
AACGGTTGAGATGGTCTGGGCACTTTCTTCTTCAACGCTGATCCCAAATT
CCTCCTCCAGTCCCATCACAATCTCAACCGTATCAAGAGAATCAGCTCCA
AGGGCAGCGAATTTTGACTCTCCGGTAACGGTAGTATCTGCTGGGAGTGC
CAACTGCTTCTTCACAATTTGACAAACCTTATCCACGGTCTCTGGCTTGG
CCGCACAGGAAACCCGGAAGCGGGGTGCTGATCGCATTCTAAGGGATGGG
AAGCTTTTCCCATTGATGGAAAGTGAAACTGAATTCACACTAGAGATCCT
ACCCTGGGTCTGCTTG
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