CN189452

Overview
NameCN189452
Unique NameCN189452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2732 contig Csv1_Contig2732:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY1_ORYSJ (Alpha-amylase OS=Oryza sativa subsp. japonica GN=AMY1.1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH F    ++EIE L+S+R R  IH  S + I++A+ D+Y A ID KV  K+GP +       + +  V  G  Y +WE
Sbjct:  328 WPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIERLVSIRNRQGIHPASELRIMEADSDLYLAEIDGKVITKIGPRYDVEHLIPEGFQVVAHGDGYAIWE 432          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY5_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  R MQGYAYILTH GTP +FYDH F    ++EI+ L+SV  R+ IH  S+++I++A+ D+  A ID KV +KLGP +         +     G DY VWE
Sbjct:   29 WPFPSDRVMQGYAYILTHQGTPCIFYDHFFDWGPKEEIDRLVSVSTRHGIHSESKLQIIEADADLCLAEIDGKVIVKLGPRYDVGNLIPGGFEVAAHGNDYAVWE 133          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY1_HORVU (Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEP----PSGSQNWCFVT--EGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH F+  ++ +I AL+++RKRN I   S ++I+  E D Y A ID KV +K+G   Y+     P+G     FVT   G DY VWE
Sbjct:  323 WPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIG-SRYDVGAVIPAG-----FVTSAHGNDYAVWE 427          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSJ (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. japonica GN=AMY2A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH F    +++I AL++VR+RN +   S ++I+  + D Y A ID KV MK+G  +         +     G  Y VWE
Sbjct:  322 WPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEQIAALVAVRQRNGVTATSSLKIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPGFHLAAHGNGYAVWE 426          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSI (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH F    +++I AL++VR+RN +   S ++I+  + D Y A ID KV MK+G  +         +     G  Y VWE
Sbjct:  322 WPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEQIAALVAVRQRNGVTATSSLKIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPGFHLAAHGNGYAVWE 426          
The following BLAST results are available for this feature:
BLAST of CN189452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMY1_ORYSJ6.392e-2045.71Alpha-amylase OS=Oryza sativa subsp. japonica GN=A... [more]
AMY5_HORVU3.173e-1946.67Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMY1_HORVU7.068e-1947.75Alpha-amylase type A isozyme OS=Hordeum vulgare GN... [more]
AMY2A_ORYSJ1.021e-1742.86Alpha-amylase isozyme 2A OS=Oryza sativa subsp. ja... [more]
AMY2A_ORYSI1.021e-1742.86Alpha-amylase isozyme 2A OS=Oryza sativa subsp. in... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189452 ID=CN189452; Name=CN189452; organism=Citrus sinensis; type=EST; length=739bp
GAGGAAATCATATATTTTTTACAAAGTTCTATAACAACAATGAAACGTAT
AATTCCACTCTGGGTGTTCTTTTAAATATAAACCAGCTTCCACCAGCTAG
TCGTAAAATCCAAGTACTGTAAATGACTTGTAAACAGGCTTGAGCACTAT
CTGTGGCTGCAGCAATACTCAATTTCCAAAGCTGCATTGCCCTTAATCAA
GTCGCTCTTAACCCTTCTATAAATGACATGTAAAATAATGTTGGTATATG
GTACACTAACTTCTATTTCAGGTTTGGAGCACACCACCTTCAAGGAAAAC
TAAACTATCCCCTTCTGGTATTCGCCAGATTGCTCTAGAAATACAAGCTA
CTTCACAGTGAATACTTATCTAATCAATTTTACGAGATTAACAATACTGC
TGTGATTATATATTAAGCTGCTTCCCAGACCTTGTAATCTCTCCCCTCCG
TTACAAAACACCAATTTTGGGACCCACTTGGAGGTTCATAATGACCTGGT
CCAAGCTTCATTGCAACTTTTTCATCGATGATGGCTGCATATACATCTCT
CTCTGCCTTCACAATTTCAACTCTACTACGGCAGTGGATTTTATTCCTTT
TTCTCACAGAGAGAAGAGCTTCAATCTCCTGTCGATAATGAGAAAAGATA
TGATCATAGAACACTGATGGTGTTCCTGGATGAGTTAGGATGTAAGCATA
TCCTTGCATTTCCCTTCCACCTGGAAATCTCCAATGACC
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