CN189450

Overview
NameCN189450
Unique NameCN189450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.404e-69
Identity = 118/147 (80.27%), Postives = 135/147 (91.84%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI +EL DL KDPP+SCSAGPV +D+FHWQATIMGP DSPYAGGVF +SIHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTD+++YE +AR WT+KYA+
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.404e-69
Identity = 117/147 (79.59%), Postives = 136/147 (92.52%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPY+GGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YKTD+A+YE+TAR WT+KYA+
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.472e-68
Identity = 117/147 (79.59%), Postives = 127/147 (86.39%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH YK D+ KY   AR WTQKYAM
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.734e-68
Identity = 116/147 (78.91%), Postives = 129/147 (87.76%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPPDSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WT+KYAM
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.010e-67
Identity = 115/146 (78.77%), Postives = 133/146 (91.10%), Query Frame = -2
Query:  267 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 704
            +SKRI KEL DL +DPP SCSAGPV +D++HWQA+IMGP DSPYAGGVF +SIHFP DYPFKPPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIA +YKTDKAKYE+TA+ WT+KYA+
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.010e-67
Identity = 114/147 (77.55%), Postives = 133/147 (90.48%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            M+ KRI KEL DL +DPP+SCSAGPV +D++HWQA+IMGPPDSPYAGGVF +SIHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK D+ KYE+TA+ WT+KYA+
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.319e-67
Identity = 115/147 (78.23%), Postives = 129/147 (87.76%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPP+SPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ +Y   AR WTQKYAM
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.723e-67
Identity = 117/147 (79.59%), Postives = 127/147 (86.39%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.723e-67
Identity = 117/147 (79.59%), Postives = 127/147 (86.39%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.723e-67
Identity = 117/147 (79.59%), Postives = 127/147 (86.39%), Query Frame = -2
Query:  267 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 707
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of CN189450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC4_SCHPO2.404e-6980.27Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_COLGL2.404e-6979.59Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D4_HUMAN3.472e-6879.59Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBCD1_DROME7.734e-6878.91Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC5_YEAST1.010e-6778.77Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_CANAL1.010e-6777.55Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC2_CAEEL1.319e-6778.23Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D2_XENLA1.723e-6779.59Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.723e-6779.59Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.723e-6779.59Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189450 ID=CN189450; Name=CN189450; organism=Citrus sinensis; type=EST; length=717bp
GACCGGTTTGAGATACATGGTAAACAAATGCGTGCACCCAAGAACATTAA
GTCATAAACCACTGATCTTACAAGATCAATGTCAACACAAGCAAGCTACA
ATACAACATCAATCTTGTTTTGATGGAAGACAGTGCATGAACACCATCTT
CAATTATCATTTCCAAAAGGCAAAAACAAAGACGGAAGACGAGCATATCA
CACTTCATTTTATACATAAATATTATGTGATGAAAGACTATGTCCTAGAT
GATTTCATACTTAGCCCATGGCATACTTTTGGGTCCAGCTCCTAGCAGTT
GATTCATACTTAGCCTTGTCTGTCTTGTACATGTGAGCTATTTCTGGCAC
CAAAGGGTCATCTGGGTTTGGGTCCGTCAACAATGAACAAATTGAGAGCA
ATACCTTAGATATAGTGAGGGCAGGACTCCACTGCTCTTTTAGTATGTCG
AGACATATACTGCCATTGCTGTTAATATTTGGGTGAAAAACCTTGGTCCT
AAACGCGACCTTAGGTGGTTTGAATGGATAATCAGGAGGGAAATGGATTG
AAACTAGAAATACACCTCCTGCATAAGGACTATCTGGGGGGCCCATTATG
GTTGCTTGCCAATGAAACATGTCTTCAGCCACAGGACCAGCACTGCAAGA
GGTGGGAGGATCTTTCTGAAGATCCTTGAGCTCCTTCAAGATTCTCTTCG
AAGCCATGAACAAACTA
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