CN189450

Overview
NameCN189450
Unique NameCN189450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.360e-30
Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = -2
Query:  291 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTAR 704
            A +R++++ K +Q+DPP   SA PV++++  W A I+GP D+P+  G F + + F   YP KPP V F + +FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E A +++ +K +Y    R
Sbjct:    5 ARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVR 142          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 57/145 (39.31%), Postives = 92/145 (63.45%), Query Frame = -2
Query:  285 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 704
            A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E+  +SW
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = -2
Query:  270 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 707
            +A +RI +E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = -2
Query:  270 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 707
            +A +RI +E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = -2
Query:  270 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 707
            +A +RI +E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.059e-28
Identity = 55/134 (41.04%), Postives = 84/134 (62.69%), Query Frame = -2
Query:  303 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 704
            A +R++++ K L  D P   S  P  +++  W A I GPP++P+  G F +++ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE
Sbjct:    5 AKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYE 138          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = -2
Query:  267 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPP-DSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 695
            RI+KE + L  +P     A P   +  ++   I G   DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +KT++A+   TAR+WT+ YAM
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28
Identity = 59/148 (39.86%), Postives = 91/148 (61.49%), Query Frame = -2
Query:  270 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 701
            + R+ +EL  L  +PP   +     + M   +A I+G  ++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 TSRLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28
Identity = 60/148 (40.54%), Postives = 92/148 (62.16%), Query Frame = -2
Query:  270 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 701
            + R+ +EL  L  +PP   +     + M   +A I+G  ++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CN189450 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = -2
Query:  291 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT--------DKAKYESTAR 701
            SKR+  EL +L   P    SA P  +++F+W  TI G  D+ Y    F +S+ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++          DK   E+T+R
Sbjct:    8 SKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
The following BLAST results are available for this feature:
BLAST of CN189450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_SCHPO8.360e-3041.30Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_KLULA1.092e-2939.31Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBE2K_MOUSE1.862e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.862e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.862e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC2_CRYNE2.059e-2841.04Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UE2NL_HUMAN3.512e-2844.44Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2T_BOVIN3.512e-2839.86Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2T_HUMAN5.991e-2840.54Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2C_DICDI5.991e-2842.76Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189450 ID=CN189450; Name=CN189450; organism=Citrus sinensis; type=EST; length=717bp
GACCGGTTTGAGATACATGGTAAACAAATGCGTGCACCCAAGAACATTAA
GTCATAAACCACTGATCTTACAAGATCAATGTCAACACAAGCAAGCTACA
ATACAACATCAATCTTGTTTTGATGGAAGACAGTGCATGAACACCATCTT
CAATTATCATTTCCAAAAGGCAAAAACAAAGACGGAAGACGAGCATATCA
CACTTCATTTTATACATAAATATTATGTGATGAAAGACTATGTCCTAGAT
GATTTCATACTTAGCCCATGGCATACTTTTGGGTCCAGCTCCTAGCAGTT
GATTCATACTTAGCCTTGTCTGTCTTGTACATGTGAGCTATTTCTGGCAC
CAAAGGGTCATCTGGGTTTGGGTCCGTCAACAATGAACAAATTGAGAGCA
ATACCTTAGATATAGTGAGGGCAGGACTCCACTGCTCTTTTAGTATGTCG
AGACATATACTGCCATTGCTGTTAATATTTGGGTGAAAAACCTTGGTCCT
AAACGCGACCTTAGGTGGTTTGAATGGATAATCAGGAGGGAAATGGATTG
AAACTAGAAATACACCTCCTGCATAAGGACTATCTGGGGGGCCCATTATG
GTTGCTTGCCAATGAAACATGTCTTCAGCCACAGGACCAGCACTGCAAGA
GGTGGGAGGATCTTTCTGAAGATCCTTGAGCTCCTTCAAGATTCTCTTCG
AAGCCATGAACAAACTA
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