CN189446

Overview
NameCN189446
Unique NameCN189446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.055e-77
Identity = 142/216 (65.74%), Postives = 173/216 (80.09%), Query Frame = 3
Query:   57 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 701
            MA+RA+TRVHS+RERL +TLSAH+NE+LAL SR   +G+G+LQ HQL+ E+E+ I   +R+ L +G F +VL+A QEAIV+PPWVALA+RPRPGVWEY+RVNV            YL FKEELVDG    NF LELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FL+ H + G +MMLNDRIQ L +LQ  LR+A+EY+
Sbjct:    1 MADRAMTRVHSVRERLTDTLSAHKNELLALFSRFVKQGQGMLQPHQLLTEYEAVIPAADREKLKDGVFEDVLKAAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELAVEELTVPEYLQFKEELVDGSGQSNFTLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLKEHHYNGTSMMLNDRIQTLGALQASLRRADEYV 216          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.055e-77
Identity = 141/219 (64.38%), Postives = 177/219 (80.82%), Query Frame = 3
Query:   51 ESMAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLT 704
            E   +R L+R+HS+RER+ ++LSAH NE++A+ +R++  GKG+LQ HQ+IAE+ + I E  R+ L +GAF +VLRA QEAIV+PPWVALA+RPRPGVWEY+RVNV            YL FKE+LV+ G N NFVLELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L++LQ  LRKAEE+L+
Sbjct:    3 EGAGDRVLSRLHSVRERIGDSLSAHPNELVAVFTRLKNLGKGMLQPHQIIAEYNNAIPEAEREKLKDGAFEDVLRAAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELAVEELRVPEYLQFKEQLVEEGPNNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLSALQGALRKAEEHLS 221          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.237e-77
Identity = 139/218 (63.76%), Postives = 175/218 (80.28%), Query Frame = 3
Query:   51 ESMAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 701
            E+  ERALTR+HS+RER+ ++LSAH NE++A+ SR+  +GKG+LQ HQ+IAE+ + I E  R+ L + A  +VLR  QEAIV+PPW+ALA+RPRPGVWEY+R+NV            YL FKE+LVDG +  NFVLELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L++LQ  LRKAE++L
Sbjct:    3 ETTGERALTRLHSMRERIGDSLSAHTNELVAVFSRLVNQGKGMLQPHQIIAEYNAAIPEGEREKLKDSALEDVLRGAQEAIVIPPWIALAIRPRPGVWEYLRINVSQLGVEELSVPEYLQFKEQLVDGSTQNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLDALQGALRKAEKHL 220          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.167e-76
Identity = 139/219 (63.47%), Postives = 178/219 (81.28%), Query Frame = 3
Query:   51 ESMAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLT 704
            E+  +R L+R+HS+RER+ ++LSAH NE++A+ +R+   GKG+LQ HQ+IAE+ + ISE +R+ L +GAF +VLR+ QE IV+ PWVALA+RPRPGVWEY+RVNV            YL FKE+LV+ G+N NFVLELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L++LQ  LRKAEE+L+
Sbjct:    3 EAAGDRVLSRLHSVRERIGDSLSAHPNELVAVFTRLVNLGKGMLQAHQIIAEYNNAISEADREKLKDGAFEDVLRSAQEGIVISPWVALAIRPRPGVWEYVRVNVSELAVELLTVPEYLQFKEQLVEEGTNNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLSALQGALRKAEEHLS 221          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.426e-74
Identity = 138/210 (65.71%), Postives = 165/210 (78.57%), Query Frame = 3
Query:   72 LTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 701
            L R+HSLRERL  T S+H NE++AL SR   +GKG+LQ HQL+AEF+++ E +++      F ++LRA QEAIVLPPWVALA+RPRPGVW+YIRVNV            YL FKE+LVDG +N NFVLELDFEPFNASFPRP++SKSIGNGV+FLNRHLS+KLF DKES++PLL FL+ H HKG  MMLNDRIQ+L  LQ  LRKAEEYL
Sbjct:    5 LARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRHQLLAEFDALIEADKEKYAP--FEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGHTNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNHKGTTMMLNDRIQSLRGLQSSLRKAEEYL 212          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.432e-74
Identity = 138/210 (65.71%), Postives = 166/210 (79.05%), Query Frame = 3
Query:   72 LTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 701
            LTR+HSLRERL  T S+H NE++AL SR   +GKG+LQ HQL+AEF+++ + +++      F ++LRA QEAIVLPPWVALA+RPRPGVW+YIRVNV            YL FKE+LVDG SN NFVLELDFEPFNASFPRP++SKSIGNGV+FLNRHLS+KLF DKES++PLL FL+ H +KG  MMLNDRIQ+L  LQ  LRKAEEYL
Sbjct:    5 LTRLHSLRERLGATFSSHPNELIALFSRYVHQGKGMLQRHQLLAEFDALFDSDKEKYAP--FEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGQSNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNYKGTTMMLNDRIQSLRGLQSSLRKAEEYL 212          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.149e-74
Identity = 137/216 (63.43%), Postives = 172/216 (79.63%), Query Frame = 3
Query:   57 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 701
            M ER LTR+HS++ERL ++LS H NE+LAL SR   +GKG+L+ HQL+ E+ES I E +R+ L +G F + LRA+QEAIV+PPWVALA+RPRPGVWEY+RVNV+           YL FKE+LVD  S  NFVLE+DFEPFNA+ PRP+LSKSIGNGV+FLNRHLS+KLFHDKES++PLL FLR H +KG  +MLNDR+Q+L++LQ  LRKA+ YL
Sbjct:    1 MTERRLTRIHSIKERLGDSLSHHPNELLALFSRFIKQGKGMLERHQLLTEYESVIPEADREKLKDGVFEDTLRASQEAIVIPPWVALAIRPRPGVWEYVRVNVNELAVEECSE--YLKFKEDLVDRSSQSNFVLEMDFEPFNANVPRPSLSKSIGNGVQFLNRHLSSKLFHDKESLYPLLNFLREHNYKGTTLMLNDRLQSLSALQTALRKADRYL 214          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.243e-74
Identity = 136/219 (62.10%), Postives = 170/219 (77.63%), Query Frame = 3
Query:   51 ESMAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLT 704
            E+  ERAL+RVHS+RER+  +LSAH NE++A+ SR+  +GKG+LQ HQ+ AE+ + I E  R+ L    F ++LR  QEAIV+PPWVALA+RPRPGVWEY+RVNV            YL FKE+L +G ++ NFVLELDF PFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L +LQ  LRKAE +L+
Sbjct:    3 ETAGERALSRVHSVRERIGHSLSAHTNELVAVFSRLVNQGKGMLQPHQITAEYNAAIPEAEREKLKNTPFEDLLRGAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELGVEELSVLRYLQFKEQLANGSTDNNFVLELDFGPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLGTLQGALRKAETHLS 221          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.804e-69
Identity = 131/210 (62.38%), Postives = 161/210 (76.67%), Query Frame = 3
Query:   72 LTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 701
            LTR+HSLRERL  T S+H NE++AL SR   +GKG+LQ HQL+AEF+++ E +++      F ++LRA QEAIVLPPWVALA+RPR GVW+YIRVNV            YL FKE+LVD  ++  FVLELDFEPFNASFPRP++SKS G GV+FLNRHLS+KLF DKES++PLL FL+ H +KG  M+LNDRIQ+L  LQ  LRKAEEYL
Sbjct:    5 LTRLHSLRERLGATFSSHPNELIALFSRYVHQGKGMLQRHQLLAEFDALFESDKEKYAP--FEDILRAAQEAIVLPPWVALAIRPRTGVWDYIRVNVSELAVEELTVSEYLAFKEQLVDEHASRKFVLELDFEPFNASFPRPSMSKSYGKGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNYKGTTMILNDRIQSLRGLQSALRKAEEYL 212          
BLAST of CN189446 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.402e-68
Identity = 124/206 (60.19%), Postives = 156/206 (75.73%), Query Frame = 3
Query:   87 SLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLT 704
            SLR+R + T S+HR EI   LSRI+  G GIL+ HQL +EF++IS+ +R  L + A  ++L + QEAIV  PW+ALA+R RPGVWEY+R+NVH           YL+ KEELV+  SNGNFVLELDF PF AS PRPTL+KSIGNGVEFLNRHLSAK+F DK+SMHPLL+FLR+H H G+ +MLN+R+Q +N LQ +LR A EYL+
Sbjct:    7 SLRQRFESTFSSHRQEIFMFLSRIQSLGNGILKPHQLFSEFQAISKIDRLKLEDSALVQLLNSAQEAIVCSPWIALAIRLRPGVWEYVRLNVHQLVVEELTVPDYLYLKEELVNASSNGNFVLELDFAPFTASIPRPTLTKSIGNGVEFLNRHLSAKMFQDKDSMHPLLDFLRLHHHNGRTLMLNNRVQTVNGLQDILRIAGEYLS 212          
The following BLAST results are available for this feature:
BLAST of CN189446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS2_TULGE1.055e-7765.74Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS2_MAIZE1.055e-7764.38Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS3_ORYSJ5.237e-7763.76Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS1_ORYSJ1.167e-7663.47Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS2_ORYSJ1.426e-7465.71Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS1_MAIZE2.432e-7465.71Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS1_TULGE4.149e-7463.43Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS2_HORVU9.243e-7462.10Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]
SUS1_HORVU1.804e-6962.38Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]
SUS2_DAUCA3.402e-6860.19Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189446 ID=CN189446; Name=CN189446; organism=Citrus sinensis; type=EST; length=706bp
GAGGGTTTGCTTGGTTCCTTGTGTTGCAGTTGAAGTTTTTGTTTGTCTGA
GAATCAATGGCCGAACGTGCTTTGACCCGCGTTCACAGTCTCCGCGAGCG
TTTGGATGAGACTCTCTCTGCCCACAGGAATGAAATCTTGGCCCTTTTGT
CAAGGATTGAGGGCAAGGGCAAAGGAATCTTGCAAAACCATCAACTTATT
GCTGAGTTTGAATCAATTTCTGAGGAAAACAGAAAGCATCTAACTGAGGG
TGCATTTGGTGAAGTTCTAAGAGCCACCCAGGAAGCAATTGTTTTGCCTC
CGTGGGTAGCGCTTGCCGTGCGTCCAAGGCCCGGTGTGTGGGAGTACATC
CGAGTGAATGTCCATGCCCTTGTCGTTGAGGAGCTGCTTGTAGCCGAGTA
CCTGCACTTCAAGGAGGAACTTGTCGATGGAGGCTCCAATGGCAACTTCG
TGCTTGAGTTGGATTTTGAGCCATTCAATGCCTCGTTCCCTCGCCCAACT
CTTTCAAAGTCTATTGGAAATGGTGTGGAATTCCTTAACCGCCACCTTTC
TGCGAAGCTCTTCCATGACAAGGAGAGCATGCATCCACTGCTTGAATTTC
TCCGCGTCCACTGCCACAAGGGCAAAAACATGATGCTGAATGACAGAATT
CAGAACTTGAATTCTCTTCAACATGTTCTGAGGAAGGCAGAGGAGTATCT
GACCAC
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