CN189445 | Citrus Genome Database

Overview


Name	CN189445
Unique Name	CN189445
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	781

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10200	contig	Csv1_Contig10200:1999..2786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.086e-89
Identity = 155/190 (81.58%), Postives = 173/190 (91.05%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KDLEEQA+MKKMY LID YKLNGQFRWIS+Q NRVRNGELYR I DTKGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G SG+HIDPYHGE+AAE++V+FFE+CK +PS+W+ IS GGLKRI+EKYTW+IYS+RLLTL GVYGFWKHVS LDR+E RRYLEMF ALKYR LAESVPLAV+
Sbjct:  612 KDLEEQAQMKKMYGLIDTYKLNGQFRWISAQKNRVRNGELYRCIADTKGAFVQPAFYEAFGLTVIEAMTCGLPTFATIHGGPAEIIVHGTSGFHIDPYHGEKAAELIVNFFERCKTEPSHWETISAGGLKRIQEKYTWQIYSERLLTLGGVYGFWKHVSKLDRIEIRRYLEMFCALKYRNLAESVPLAVD 801

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.418e-89
Identity = 155/190 (81.58%), Postives = 174/190 (91.58%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KDLEEQAE+KKMYSLI++YKL+G  RWIS+QMNRVRNGELYRYI D+KG FVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G SGYHIDPYHG++AAE+LVDFFEK K D ++WD IS GGLKRI EKYTWKIYS+RLLTL GVYGFWK+VSNLDR E++RYLEMFYALKYR LA+SVPLAV+
Sbjct:  617 KDLEEQAELKKMYSLIEEYKLDGHIRWISAQMNRVRNGELYRYIADSKGVFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGYHIDPYHGDKAAELLVDFFEKSKKDQTHWDAISNGGLKRIYEKYTWKIYSERLLTLAGVYGFWKYVSNLDRRETKRYLEMFYALKYRNLAKSVPLAVD 806

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.418e-89
Identity = 152/190 (80.00%), Postives = 174/190 (91.58%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KDLEEQAE+KKMY LI++YKL G  RWIS+QMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G SG+HIDPYHG++A+E LV FFEKCK DP++W+KIS GGL+RI EKYTWK+YS+RL+TL GVYGFWK+VSNLDR E+RRYLEMFYALKYR LA+SVPLA++
Sbjct:  615 KDLEEQAELKKMYKLIEEYKLQGHIRWISAQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGFHIDPYHGDKASEQLVSFFEKCKEDPAHWEKISQGGLQRIYEKYTWKLYSERLMTLAGVYGFWKYVSNLDRRETRRYLEMFYALKYRNLAKSVPLAID 804

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.419e-89
Identity = 154/190 (81.05%), Postives = 172/190 (90.53%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KD EEQAE K+MYSLI++YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FFEK  ADPSYWDKIS GGLKRI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEMFYALKYR LA +VPLAV+
Sbjct:  612 KDREEQAEFKRMYSLIEEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKSTADPSYWDKISQGGLKRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMFYALKYRSLAAAVPLAVD 801

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.159e-89
Identity = 151/190 (79.47%), Postives = 172/190 (90.53%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KD EEQAE KKMYSLID+YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+E+MTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FF+KCKADPSYWD+IS GGL+RI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRY+EMFYALKYR LA  VPL+ +
Sbjct:  613 KDREEQAEFKKMYSLIDEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIESMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFDKCKADPSYWDEISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASQVPLSFD 802

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 2.048e-88
Identity = 151/190 (79.47%), Postives = 169/190 (88.95%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KD EEQAE KKMY LIDQYKL G  RWIS+QMNRVRNGELYRYICDTKG FVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FFEKCK D +YWD IS GGL+RI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRY+EMFYALKYR LA +VPLAV+
Sbjct:  613 KDREEQAEFKKMYGLIDQYKLKGHIRWISAQMNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASAVPLAVD 802

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.674e-88
Identity = 151/190 (79.47%), Postives = 172/190 (90.53%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KD EEQAE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+G SGYHIDPY G++A+ +LVDFF+KC+A+PS+W KIS GGL+RIEEKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEM YALKYR +A +VPLAVE
Sbjct:  621 KDKEEQAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQGDKASALLVDFFDKCQAEPSHWSKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVE 810

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.016e-87
Identity = 150/190 (78.95%), Postives = 171/190 (90.00%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KD EEQAE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVE+MTCGLPTFAT  GGPAEIIVNG SG+HIDPY G++A+ +LV+FFEKC+ DPS+W KIS GGL+RIEEKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEM YALKYR +A +VPLAVE
Sbjct:  621 KDKEEQAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVEFFEKCQEDPSHWTKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVE 810

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 3.269e-86
Identity = 146/190 (76.84%), Postives = 172/190 (90.53%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KD EEQAE KKM++LI+QY LNG  RWIS+QMNRVRNGELYRYICD +GAFVQPALYEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G SGYHIDPY  ++A+ +LV+FFEKC+ DP++W KIS GGL+RIEEKYTWK+YS+RL+TL+GVYGFWK+V+NLDR E+RRYLEM YALKYRK+A +VPLA+E
Sbjct:  621 KDKEEQAEFKKMFNLIEQYNLNGHIRWISAQMNRVRNGELYRYICDMRGAFVQPALYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQNDKASALLVEFFEKCQEDPNHWIKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVTNLDRRETRRYLEMLYALKYRKMATTVPLAIE 810

[Close]

BLAST of CN189445 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.614e-85
Identity = 146/190 (76.84%), Postives = 168/190 (88.42%), Query Frame = -3

Query:  210 KDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 779
            KD EEQ E KKM+ LI++Y L+G  RWIS+QMNRVRNGELYRYICD KGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIVNG SGYHIDPY  ++A+ +LV FF KC+ DPS+W+KIS GGL+RIEEKYTWK+YS+RL+TL+GVYGFWK+VSNLDR E+RRYLEM YALKYRK+A +VPLAVE
Sbjct:  621 KDKEEQVEFKKMFDLIEKYNLSGHIRWISAQMNRVRNGELYRYICDMKGAFVQPAFYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVNGVSGYHIDPYQNDKASALLVGFFGKCQEDPSHWNKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVSNLDRRETRRYLEMLYALKYRKMAATVPLAVE 810

The following BLAST results are available for this feature:

BLAST of CN189445 vs. ExPASy Swiss-Prot

BLAST of CN189445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34


Match Name	E-value	Identity	Description
SUS2_DAUCA	1.086e-89	81.58	Sucrose synthase isoform 2 OS=Daucus carota PE=2 S...	[more]
SUS2_TULGE	1.418e-89	81.58	Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1	[more]
SUS1_TULGE	1.418e-89	80.00	Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1	[more]
SUS1_HORVU	2.419e-89	81.05	Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ...	[more]
SUS1_MAIZE	3.159e-89	79.47	Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1	[more]
SUS2_ORYSJ	2.048e-88	79.47	Sucrose synthase 2 OS=Oryza sativa subsp. japonica...	[more]
SUS2_MAIZE	2.674e-88	79.47	Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1	[more]
SUS1_ORYSJ	1.016e-87	78.95	Sucrose synthase 1 OS=Oryza sativa subsp. japonica...	[more]
SUS3_ORYSJ	3.269e-86	76.84	Sucrose synthase 3 OS=Oryza sativa subsp. japonica...	[more]
SUS2_HORVU	3.614e-85	76.84	Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS06_0001N24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN189445 ID=CN189445; Name=CN189445; organism=Citrus sinensis; type=EST; length=781bp
GCAACTATATGGAATTGATGAGGGTGCAACACCCAAAGTACAAACAATGC
TGAGAAATGCAAAAAGGAAAAAAAAAATTGAAAAAAGAAAATTTAAGCCG
GTAAAAAAGTCTTTGTCCAATCGCAATCCCAGAAGGGACATTATTCTCCA
CAACTCGAGAAATCTCCACTCGGACCAACCACCCTGAGAGCTTCCTCAAT
GTCCATTTACTCCACAGCCAGAGGAACAGATTCAGCCAGCTTACGGTACT
TGAGAGCATAAAACATTTCAAGGTATCGACGGCTCTCAAGCCGATCAAGG
TTAGATACATGTTTCCAGAACCCATAGACTCCAGTCAGGGTCAGAAGCCT
CTGAGAGTAAATTTTCCATGTATACTTCTCTTCAATACGCTTCAGGCCAC
CCAGTGATATCTTGTCCCAGTATGAGGGATCTGCCTTGCACTTCTCAAAG
AAGTCAACAAGGATCTCAGCAGCCTGCTCACCATGGTAAGGATCAATGTG
GTAGCCAGATTTCCCGTTAACGATAATCTCAGCGGGGCCACCCTTGCAAG
TTGCAAATGTTGGCAATCCACAGGTCATGGCCTCAACAACAGTCAAGCCA
AAGGCCTCATACAGTGCAGGTTGCACAAAAGCTCCCTTTGTATCACAAAT
GTACCGGTACAATTCACCGTTCCTGACCCGATTCATCTGAGAAGAGATCC
ATCGGAACTGGCCATTCAATTTGTATTGATCAATGAGGGAATACATCTTC
TTCATTTCAGCCTGTTCTTCCAAGTCCTTGG