CN189442

Overview
NameCN189442
Unique NameCN189442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_PANTR (Ferrochelatase, mitochondrial OS=Pan troglodytes GN=FECH PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  344 NDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKE-LALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGS 718
            N + L +QS+VGP+ WL P TDE +  L ++G K++L +P++F S+HIETL E+D+EY + LA E G+EN  R  +LN  P F   LAD V   + S    S    +S     NPV    K FF S
Sbjct:  295 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTS 420          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_MOUSE (Ferrochelatase, mitochondrial OS=Mus musculus GN=Fech PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -1
Query:  344 GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKE-LALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGS 727
            G  N + L +QS+VGPV WL P TDE +  L ++G K++L +P++F S+HIETL E+D+EY + LA + G EN  R  +LN  P F   LAD V   + S    S   +++     NPV    K FF S
Sbjct:  289 GYPNPYRLVWQSKVGPVPWLGPQTDEAIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAQKCGAENIRRAESLNGNPLFSKALADLVHSHIQSNKLCSTQLSLNCPLCVNPVCRKTKSFFTS 417          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_HUMAN (Ferrochelatase, mitochondrial OS=Homo sapiens GN=FECH PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  344 NDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKE-LALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGS 718
            N + L +QS+VGP+ WL P TDE +  L ++G K++L +P++F S+HIETL E+D+EY + LA E G+EN  R  +LN  P F   LAD V   + S    S    +S     NPV    K FF S
Sbjct:  295 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTS 420          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_CHICK (Ferrochelatase, mitochondrial OS=Gallus gallus GN=FECH PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = -1
Query:  350 NNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKE-LALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFF 721
            +N + L +QS+VGP+ WL P TDE +  L Q+G K++L +P++F S+HIETL E+D+EY + LA E G+EN  R  +LN  P F   LAD V   + S    S    +      NPV    K FF
Sbjct:  273 SNPYRLVWQSKVGPMPWLVPQTDETIKGLCQRGKKNMLLVPIAFTSDHIETLYELDIEYAQVLANECGVENIRRAESLNGNPLFSKALADLVCSHIQSNEICSKQLTLCCPLCVNPVCRETKAFF 397          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_GEOSM (Ferrochelatase OS=Geobacter sp. (strain M21) GN=hemH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = -1
Query:  449 HTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAV 712
            HTL +QS+   VKWL+P T+  + ++ + G K+LL +P+SFVS+HIETL EID++Y E A   GIE + R  +LN +P F+  LAD V
Sbjct:  225 HTLCFQSKASRVKWLEPSTEATIEQMAKAGKKNLLMVPLSFVSDHIETLYEIDIQYGEEAKALGIERFIRTESLNSSPLFLECLADLV 312          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_DESPS (Ferrochelatase OS=Desulfotalea psychrophila GN=hemH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = -1
Query:  440 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEA 706
            L +QS+ GPV+WL+P T +VL++L Q+GVK++L +P+SFVS+H+ETL EID+ YK+ A + G+      P+LN    FIT L   V+E+
Sbjct:  228 LCFQSKSGPVEWLEPSTPDVLIQLAQEGVKNILMVPISFVSDHVETLYEIDILYKKQAKKLGM-RLTSCPSLNTQEQFITGLRQLVLES 315          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_PHEZH (Ferrochelatase OS=Phenylobacterium zucineum (strain HLK1) GN=hemH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  437 DHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEAL 715
            D  ++YQSRVGP+KWL P TD+ +   G +G K LL  P++FVSEH+ETL E+D EY  LA ESG+  + R PA      FI  LA+A + AL
Sbjct:  224 DWGISYQSRVGPLKWLGPATDDEVRRAGAEG-KGLLVSPIAFVSEHVETLVELDHEYAALAKESGVPVYLRAPAPGVAEPFIGTLAEAALGAL 315          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_GEOBB (Ferrochelatase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hemH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = -1
Query:  449 HTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAV 712
            HTL +QS+   VKWL+P T+  + ++ + G K+LL +P+SFVS+HIETL EID++Y E A   GIE + R  +LN +P F+  LAD V
Sbjct:  225 HTLCFQSKASRVKWLEPSTEATIEQMAKAGKKNLLMVPLSFVSDHIETLYEIDIQYGEEAKALGIERFVRSESLNSSPLFLECLADLV 312          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_LEPBL (Ferrochelatase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=hemH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  428 DRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSA 733
            ++G       ++QSRVGP KW +P T  +L +LG+ GVK +   P+SFVS+H+ETLEEI  + K++A  +GI  + R+PA    P FI  +A   +E++ S+
Sbjct:  240 EKGFRGKCHTSFQSRVGPSKWTEPNTITMLEQLGKNGVKRVAVYPISFVSDHLETLEEIGEQLKKIAYNNGIAEYHRIPAPGIYPKFIEAMAKIGLESIQSS 341          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_LEPBJ (Ferrochelatase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=hemH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  428 DRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSA 733
            ++G       ++QSRVGP KW +P T  +L +LG+ GVK +   P+SFVS+H+ETLEEI  + K++A  +GI  + R+PA    P FI  +A   +E++ S+
Sbjct:  240 EKGFQGKCHTSFQSRVGPSKWTEPNTITMLEQLGKNGVKRVAVYPISFVSDHLETLEEIGEQLKKIAYNNGIAEYHRIPAPGIYPKFIEAMAKIGLESIQSS 341          
The following BLAST results are available for this feature:
BLAST of CN189442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
HEMH_PANTR2.041e-1842.86Ferrochelatase, mitochondrial OS=Pan troglodytes G... [more]
HEMH_MOUSE2.041e-1841.86Ferrochelatase, mitochondrial OS=Mus musculus GN=F... [more]
HEMH_HUMAN2.041e-1842.86Ferrochelatase, mitochondrial OS=Homo sapiens GN=F... [more]
HEMH_CHICK2.041e-1842.40Ferrochelatase, mitochondrial OS=Gallus gallus GN=... [more]
HEMH_GEOSM3.849e-1748.86Ferrochelatase OS=Geobacter sp. (strain M21) GN=he... [more]
HEMH_DESPS3.849e-1748.31Ferrochelatase OS=Desulfotalea psychrophila GN=hem... [more]
HEMH_PHEZH5.027e-1750.54Ferrochelatase OS=Phenylobacterium zucineum (strai... [more]
HEMH_GEOBB5.027e-1748.86Ferrochelatase OS=Geobacter bemidjiensis (strain B... [more]
HEMH_LEPBL6.565e-1741.18Ferrochelatase OS=Leptospira borgpetersenii serova... [more]
HEMH_LEPBJ6.565e-1741.18Ferrochelatase OS=Leptospira borgpetersenii serova... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189442 ID=CN189442; Name=CN189442; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTTTTTTTTAGCCAATGAGCCAATGAAAACAAAATATATCAT
AAATACATTCCACAAAGATTTATATTTGATTATTTTTCAGTAACTGACGA
CCACAGCAACAAAAAGCCGCGGTATTCCCCAGTCATAAATATTCCCTCAT
TGTATCGCTAGTTTCCCGTATAAGAATAAAATAGAGAAAGACCAAAATTC
TTGAACGGTATCAGTATTTTTATCTCTCCTTGCTCAAGACGTAATATTAC
TCAAGTAAGCTTGCCTCTTAATCACCTTCAAAAGAGCTGATTCCTAAATG
CATTAATCATTCTTGGCGAGAAAAACAGAACAAATGCCAAGATCGAACCA
AAGAACATTTTGATGGCATATCTCACAGGGTTATGGTCATCCTCTTGAGA
GATATTCTTAGGGGCAGACATGGCTAATGCCGAAGGTAGAGCTTCTATTA
CTGCATCTGCCAAATCTGTGATGAAGGAAGGGGTGCAATTCAGAGCAGGT
ACACGTCCCCAATTTTCAATGCCGGATTCAAGAGCCAATTCCTTGTACTC
CATGTCAATCTCTTCAAGAGTTTCAATGTGCTCGCTCACAAAACTGACTG
GAATGGCTAGAAGACTCTTGACACCTTTCTGGCCAAGCTCCACAAGAACT
TCATCAGTGTAAGGCTTCAGCCATTTTACAGGCCCAACTCGACTCTGGTA
TGCCAAAGTATGATCATTGTTGATTCCTCTATCTTT
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