CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.187e-44
Identity = 88/157 (56.05%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            E   SF+ MG++E++LRG+Y YGFEKPSAIQQR ++P  +G DVI QAQSGTGKT+     + Q +D    + QAL+L+PTRELA Q EK ++A+G +  ++ HAC+GG SV ED R L+ GVHVV GTPGRV DM++R+SLR   IK+ +LDE+DE
Sbjct:   32 EPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDE 188          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.550e-44
Identity = 89/153 (58.17%), Postives = 115/153 (75.16%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SF  MG++++LLRG+Y YGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D    + QAL+L+PTRELA Q EKV+ A+GDY+ V+ HAC+GG SV ED R L+ GV VV GTPGRV DM++R++LR   IK+ +LDE+DE
Sbjct:   19 SFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDE 171          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.454e-44
Identity = 86/157 (54.78%), Postives = 118/157 (75.16%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +V+ +F++M L+ +LL+GIYAYGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ +D    +CQAL+L+PTRELA QI+ V++ LGDY+ +  HAC+GG +V ED + LQ G  +V GTPGRV D+++R++L+   IK+ +LDEADE
Sbjct:   23 KVHRTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADE 179          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.511e-44
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            T+YD+V   FD M L++ LL+G+Y YGFE+PSAIQQR I+P  +  DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS  ED   L+    +VVGTPGRV D ++R   + D IKMF+LDEADE
Sbjct:   16 TNYDKVVYKFDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVEDTEGLK-DAQIVVGTPGRVSDNIQRHRFKTDNIKMFILDEADE 175          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.695e-44
Identity = 87/157 (55.41%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +V+ +F++M L+  LL+GIYAYGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ LD    +CQALVL+PTRELA QI+ V++ LGDY+ ++ +AC+GG +V  D + LQ G  +V GTPGRV D+++R++L   +IKM +LDEADE
Sbjct:   23 KVHRTFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADE 179          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.313e-43
Identity = 90/156 (57.69%), Postives = 112/156 (71.79%), Query Frame = 3
Query:  240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            V  +F++M LQENLLRGIY YGFE PSAIQ R I    +G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI +V+R LGDY+ V   AC GG ++++D   +  G HV+ GTPGRV DM++R+ +   ++KM VLDEADE
Sbjct:   21 VSPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADE 176          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.222e-42
Identity = 90/156 (57.69%), Postives = 114/156 (73.08%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V++D R LQAGV V VGTPGRV D+++R +LR + +++ VLDEADE
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADE 182          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 90/156 (57.69%), Postives = 114/156 (73.08%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V++D R LQAGV V VGTPGRV D+++R +LR + +++ VLDEADE
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADE 182          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 90/156 (57.69%), Postives = 114/156 (73.08%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V++D R LQAGV V VGTPGRV D+++R +LR + +++ VLDEADE
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADE 182          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 80/153 (52.29%), Postives = 111/153 (72.55%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SFD MG+ + +LRG+Y YG++KPS IQQR +VP  KG DVI QAQSGTGKT+     + Q ++    + Q LVL+P+RELA Q EK ++A+G +  ++ HAC+GG S+ ED + L+ GVH V GTPGRV+DM++R SL+   +K+ VLDE+DE
Sbjct:   23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDE 175          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH2_ARATH1.187e-4456.05DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A3_NICPL1.550e-4458.17Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
FAL1_CANAL3.454e-4454.78ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
IF4A_VANPO4.511e-4457.14ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
FAL1_LODEL7.695e-4455.41ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
FAL1_ASHGO1.313e-4357.69ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
IF4A_LEIBR4.222e-4257.69Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIMA7.202e-4257.69Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN7.202e-4257.69Probable eukaryotic initiation factor 4A OS=Leishm... [more]
RH34_ARATH1.605e-4152.29DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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