CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 85/154 (55.19%), Postives = 112/154 (72.73%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F++M L+E LLRGIY+YGFE PSAIQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI KV+  LGDY+ VK +A  GG ++++D ++I + G  V+ GTPGRV DM++R+ +   ++++ VLDEADE
Sbjct:   24 TFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRRLIETRHVQILVLDEADE 177          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 87/157 (55.41%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +V  +F++M L+ +LLRGIY YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D    + QALVL+PTRELA Q E V+  LGDYL V  HAC GG ++++D + +     VV GTPGRV DM++RQ L     K+ VLDEADE
Sbjct:   20 KVSATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADE 176          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.741e-40
Identity = 87/157 (55.41%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK----VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SFD M L +NLLRGIY++GFEKPS+IQQR IVPF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L           VGGT V++D R LQAG  V VGTPGRV D+ +R ++R +++++ VLDEADE
Sbjct:   27 SFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDDYRKLQAGSIVAVGTPGRVVDVTKRGAMRTEHLRVLVLDEADE 183          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA----CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SFD M L +NLLRGIY++GFEKPS+IQQR IVPF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L     +     VGGT V++D R LQ+G  V VGTPGRV D+ +R ++R + +++ VLDEADE
Sbjct:   27 SFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRVVDVTKRGAMRTESLRVLVLDEADE 183          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 83/158 (52.53%), Postives = 112/158 (70.89%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +V  +F++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   V GTPGRV DM+++Q L+   ++M VLDEADE
Sbjct:   20 KVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADE 177          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 83/158 (52.53%), Postives = 112/158 (70.89%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +V  +F++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   V GTPGRV DM+++Q L+   ++M VLDEADE
Sbjct:   20 KVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADE 177          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            ++  +F++M L+++LLRGIY YGFE PSAIQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI +V+  LGDY+ V+ +A  GG ++++D  R+ + G  VV GTPGRV DM +R  L    ++M +LDEADE
Sbjct:   20 KISPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADE 177          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 87/194 (44.85%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  126 DMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D   +AP     ++++  T   ++++T G  F               + E+L+        +KPSA+ QRGIVP C GLD+IQQ+  GT  T T C GILQ+LDY   +CQALVL PT +LA + + V+  LG +L  K HA  GGTS  EDQ+IL  GV V VGTP  V  ML+ ++L PD+I+MFVLDEADE
Sbjct:   24 DSNSIAPSAIAINSKKKQTT-KDIVTTQGAQF---------------ISESLIGETQTKDLDKPSAVHQRGIVPLCNGLDIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQFLSAKAHAFCGGTSAHEDQQILSTGVQVAVGTPCHVLGMLQGRALCPDHIRMFVLDEADE 199          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 90/165 (54.55%), Postives = 105/165 (63.64%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F TS +  V  +F+AM L+ENLLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ                          V+  LGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRV DM+RR++LR   IKM VLDEADE
Sbjct:   14 EFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQS-------------------------VIMGLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADE 153          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: IF4A_ENCCU (ATP-dependent RNA helicase eIF4A OS=Encephalitozoon cuniculi GN=TIF1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.174e-30
Identity = 79/184 (42.93%), Postives = 106/184 (57.61%), Query Frame = 3
Query:  162 DARQYDTKMNEL--LSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            D R   T++ E   L +D     +S   ++D+++  GL+E+LL+GIY+ GFE PS IQ+  I P   G D+  QAQSGTGKT  F    LQ  D      Q LVLA TRE+A Q       LG ++G +V    GG+ +  D+  L+   H+VVGTPGRV  M+    L  D IK+FV+DEADE
Sbjct:   13 DTRSSGTEIREFEDLRSD-----SSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADE 191          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_CANGA2.317e-4055.19ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
FAL1_KLULA3.026e-4055.41ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
IF4A_TRYCR6.741e-4055.41Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_TRYBB1.150e-3954.78Probable eukaryotic initiation factor 4A OS=Trypan... [more]
FAL1_YEAST1.502e-3952.53ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS71.502e-3952.53ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_VANPO1.961e-3953.16ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
IF4A2_ORYSJ7.453e-3944.85Putative eukaryotic initiation factor 4A-2 OS=Oryz... [more]
FAL1_PHANO2.832e-3854.55ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]
IF4A_ENCCU2.174e-3042.93ATP-dependent RNA helicase eIF4A OS=Encephalitozoo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
back to top