CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.174e-30
Identity = 72/153 (47.06%), Postives = 97/153 (63.40%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SF+   L+  LL GI+  GFEKPS IQ+  I     G DV+ +A++GTGKTA+F    LQQ+   L + QAL+L PTRELA Q  +V+R LG +LG++     GGTS+++D   L   VHV+VGTPGRV D+  R         +FV+DEAD+
Sbjct:   31 SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADK 183          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.708e-30
Identity = 67/152 (44.08%), Postives = 97/152 (63.82%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+  GL+ +LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++  + + Q L+L PTRELA Q  +V + LG +LG+ V    GGT +R+D   LQ  VH+VVGTPGR+ D+  +Q        MF++DEAD+
Sbjct:   13 FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADK 164          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 66/152 (43.42%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+  GL+ +LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+ ++  + + Q L+L PTRELA Q  +V + LG +LG+ V    GGT++R+D   LQ  VH+VVGTPGR+ D+  +         MF++DEAD+
Sbjct:   38 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADK 189          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 74/181 (40.88%), Postives = 108/181 (59.67%), Query Frame = 3
Query:  177 DTKMNELLSTDGQDFFTSYDEVYD----SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            DT   + L+   +D     ++V +    SF+   L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA+F    LQ +   L + QAL+L PTRELA Q  +V+R LG ++G +     GGTS+R+D   L   VH++VGTPGRV D+  R+ +      +FV+DEAD+
Sbjct:    3 DTNWKQNLNLPPKDTRPQTEDVLNTKGKSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADK 183          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 69/153 (45.10%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SF+  GL+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA+F    LQQ+   L + Q L+L PTRELA Q  +V++ LG +L ++     GGT +R+D   L   VH++VGTPGRV D+  R         MFV+DEAD+
Sbjct:   30 SFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADK 182          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 65/152 (42.76%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   L+ +LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++  + + Q L+L PTRELA Q  +V + LG +LG+ V    GGT +R+D   LQ  VH+VVGTPGR+ D+  +         MF++DEAD+
Sbjct:   44 FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADK 195          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 69/153 (45.10%), Postives = 97/153 (63.40%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F+   L+  LL GI+  GFEKPS +Q+  I     G D++ +A++GTGKTA+F    LQQ    + + QAL+L PTRELA Q  +V+R LG +LG++     GGTS+R+D   L   VHV+VGTPGRV D+  R+        +FV+DEAD+
Sbjct:   31 TFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADK 183          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 68/154 (44.16%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +SF+   L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+++   L + QAL++ PTRELA Q  +V+R LG + GV      GGT++R+D   L   VHV+VGTPGRV D+  R+        +FV+DEAD+
Sbjct:   31 NSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADK 184          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+ +LL+GIY  GFEKPS IQ+  I     G D++ +A++GTGKT  FC  +L+++D      QA++L PTRELA Q  +V + L  YL ++V    GGTS+R+D   L   VH++VGTPGR+ D+ ++         M V+DEAD+
Sbjct:  124 NEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADK 277          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   L+  LL GI+  GFE PS IQ+  I     G D++ +A++GTGKTA F    LQQ++  + + QAL++ PTRELA Q  +V + LG +LG+KV    GGT++R+D   L+  VHV+VGTPGRV D+  +         MF++DEAD+
Sbjct:   30 FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADK 181          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_PICST2.174e-3047.06ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_CHAGB3.708e-3044.08ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DHH1_MAGGR1.079e-2943.42ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
DHH1_CANAL1.840e-2940.88ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DHH1_PICGU2.403e-2945.10ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DHH1_GIBZE4.099e-2942.76ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
DHH1_DEBHA4.099e-2945.10ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_CANGA1.193e-2844.16ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
RH12_ARATH1.558e-2842.21DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DHH1_YARLI1.558e-2844.08ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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