CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 72/187 (38.50%), Postives = 107/187 (57.22%), Query Frame = 3
Query:  147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +G    AR    +  ++ +T G D+    D ++D         +LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L +++  + + Q L+L PTRELA Q  +V + LG +LG+ V    GGT +R+D   LQ  VH+VVGTPGR+ D+  +Q        MF++DEAD+
Sbjct:   23 KGLNLPARDTRQQTEDVTNTRGLDW---EDFIHD--------RDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADK 198          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 63/152 (41.45%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+   ++  LL GI+  G+EKPS IQ+  I     G D++ +A++GTGKTA F    L++++    + Q L+L PTRELA Q  +V + LG +LG+ V    GGT++R+D   LQ  VH++VGTPGR+ D+  +         MFV+DEAD+
Sbjct:   49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADK 200          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 65/153 (42.48%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            SF+   L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+++   L + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   VH++VGTPGRV D+  R+        +F++DEAD+
Sbjct:   37 SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADK 189          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 72/208 (34.62%), Postives = 114/208 (54.81%), Query Frame = 3
Query:   84 TLSLHFNHHHQSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +++ +FN ++ S  D+            +    + +++L+T G  F   Y           L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+++   L + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   VH++VGTPGRV D+  R+        +F++DEAD+
Sbjct:    3 SINNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 199          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 72/208 (34.62%), Postives = 114/208 (54.81%), Query Frame = 3
Query:   84 TLSLHFNHHHQSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +++ +FN ++ S  D+            +    + +++L+T G  F   Y           L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+++   L + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   VH++VGTPGRV D+  R+        +F++DEAD+
Sbjct:    3 SINNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 199          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28
Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+  LL GIY  GFE+PS IQ+  I     G D++ +A++GTGKTA FC   L+++D      Q ++L PTRELA Q  +V + LG YL ++V    GGTS+++D   L   VH++VGTPGR+ D+ R+         M V+DEAD+
Sbjct:  147 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADK 300          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 66/154 (42.86%), Postives = 95/154 (61.69%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            + F+   L+ +LLRGIY  GFEKPS IQ+  I     G D++ +A++GTGKT  FC   L+++D      QA++L PTRELA Q  +V + L  YL ++V    GGTS+R+D   L   VH++VGTPGR+ D+ ++         M V+DEAD+
Sbjct:  154 NEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADK 307          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 71/187 (37.97%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  153 SQFDARQYDTK--MNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            S+ +  + DT+    ++LST G  F   Y           L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+++     + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   VH++VGTPGRV D+  R+        +F++DEAD+
Sbjct:   12 SKLNIPKKDTRPQTEDVLSTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADK 187          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 65/153 (42.48%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+  GL+  LL GIY  GFE+PS IQ++ I     G D++ +A++GTGKTA+F    L +++  L   QAL+L PTRELA Q  +V + LG ++  ++V    GGT++R+D   LQ  VH++VGTPGR+ D+  +     +   +FV+DEAD+
Sbjct:   38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADK 190          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 65/153 (42.48%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            F+  GL+  LL GIY  GFE+PS IQ++ I     G D++ +A++GTGKTA+F    L +++  L   QAL+L PTRELA Q  +V + LG ++  ++V    GGT++R+D   LQ  VH++VGTPGR+ D+  +     +   +FV+DEAD+
Sbjct:   38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADK 190          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_NEUCR1.558e-2838.50ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
DHH1_BOTFB1.558e-2841.45ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DHH1_KLULA3.470e-2842.48ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DHH1_YEAST5.919e-2834.62ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS75.919e-2834.62ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
RH12_ORYSJ7.731e-2842.21DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
RH6_ARATH1.010e-2742.86DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
DHH1_VANPO2.249e-2737.97ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_CRYNE2.938e-2742.48ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
DHH1_CRYNV3.837e-2742.48ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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