CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28 Identity = 72/187 (38.50%), Postives = 107/187 (57.22%), Query Frame = 3 Query: 147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +G AR + ++ +T G D+ D ++D +LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L +++ + + Q L+L PTRELA Q +V + LG +LG+ V GGT +R+D LQ VH+VVGTPGR+ D+ +Q MF++DEAD+ Sbjct: 23 KGLNLPARDTRQQTEDVTNTRGLDW---EDFIHD--------RDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADK 198
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28 Identity = 63/152 (41.45%), Postives = 94/152 (61.84%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 F+ ++ LL GI+ G+EKPS IQ+ I G D++ +A++GTGKTA F L++++ + Q L+L PTRELA Q +V + LG +LG+ V GGT++R+D LQ VH++VGTPGR+ D+ + MFV+DEAD+ Sbjct: 49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADK 200
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28 Identity = 65/153 (42.48%), Postives = 95/153 (62.09%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 SF+ L+ LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L+++ L + QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L VH++VGTPGRV D+ R+ +F++DEAD+ Sbjct: 37 SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADK 189
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28 Identity = 72/208 (34.62%), Postives = 114/208 (54.81%), Query Frame = 3 Query: 84 TLSLHFNHHHQSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +++ +FN ++ S D+ + + +++L+T G F Y L+ LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L+++ L + QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L VH++VGTPGRV D+ R+ +F++DEAD+ Sbjct: 3 SINNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 199
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28 Identity = 72/208 (34.62%), Postives = 114/208 (54.81%), Query Frame = 3 Query: 84 TLSLHFNHHHQSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +++ +FN ++ S D+ + + +++L+T G F Y L+ LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L+++ L + QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L VH++VGTPGRV D+ R+ +F++DEAD+ Sbjct: 3 SINNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 199
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28 Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 + F+ L+ LL GIY GFE+PS IQ+ I G D++ +A++GTGKTA FC L+++D Q ++L PTRELA Q +V + LG YL ++V GGTS+++D L VH++VGTPGR+ D+ R+ M V+DEAD+ Sbjct: 147 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADK 300
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27 Identity = 66/154 (42.86%), Postives = 95/154 (61.69%), Query Frame = 3 Query: 246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 + F+ L+ +LLRGIY GFEKPS IQ+ I G D++ +A++GTGKT FC L+++D QA++L PTRELA Q +V + L YL ++V GGTS+R+D L VH++VGTPGR+ D+ ++ M V+DEAD+ Sbjct: 154 NEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADK 307
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27 Identity = 71/187 (37.97%), Postives = 106/187 (56.68%), Query Frame = 3 Query: 153 SQFDARQYDTK--MNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 S+ + + DT+ ++LST G F Y L+ LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L+++ + QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L VH++VGTPGRV D+ R+ +F++DEAD+ Sbjct: 12 SKLNIPKKDTRPQTEDVLSTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADK 187
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27 Identity = 65/153 (42.48%), Postives = 98/153 (64.05%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 F+ GL+ LL GIY GFE+PS IQ++ I G D++ +A++GTGKTA+F L +++ L QAL+L PTRELA Q +V + LG ++ ++V GGT++R+D LQ VH++VGTPGR+ D+ + + +FV+DEAD+ Sbjct: 38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADK 190
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27 Identity = 65/153 (42.48%), Postives = 98/153 (64.05%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 F+ GL+ LL GIY GFE+PS IQ++ I G D++ +A++GTGKTA+F L +++ L QAL+L PTRELA Q +V + LG ++ ++V GGT++R+D LQ VH++VGTPGR+ D+ + + +FV+DEAD+ Sbjct: 38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADK 190 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |